Result of FASTA (ccds) for pFN21AE0127
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0127, 376 aa
  1>>>pF1KE0127 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8355+/-0.000905; mu= 13.1463+/- 0.054
 mean_var=59.5731+/-11.628, 0's: 0 Z-trim(104.7): 10  B-trim: 8 in 1/49
 Lambda= 0.166169
 statistics sampled from 8047 (8051) to 8047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.247), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS55547.1 TMLHE gene_id:55217|Hs108|chrX         ( 376) 2607 633.5 9.2e-182
CCDS14768.1 TMLHE gene_id:55217|Hs108|chrX         ( 421) 2315 563.5 1.2e-160
CCDS7862.1 BBOX1 gene_id:8424|Hs108|chr11          ( 387)  431 111.8   1e-24


>>CCDS55547.1 TMLHE gene_id:55217|Hs108|chrX              (376 aa)
 initn: 2607 init1: 2607 opt: 2607  Z-score: 3376.7  bits: 633.5 E(32554): 9.2e-182
Smith-Waterman score: 2607; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
              310       320       330       340       350       360

              370      
pF1KE0 RHFVSGTSIEHRGSLI
       ::::::::::::::::
CCDS55 RHFVSGTSIEHRGSLI
              370      

>>CCDS14768.1 TMLHE gene_id:55217|Hs108|chrX              (421 aa)
 initn: 2311 init1: 2311 opt: 2315  Z-score: 2997.5  bits: 563.5 E(32554): 1.2e-160
Smith-Waterman score: 2315; 93.9% identity (95.8% similar) in 359 aa overlap (1-359:1-354)

               10        20        30        40        50        60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
       ::::::::::::::::::::::::::::::::      :. .:   ...  :. .:  : 
CCDS14 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRY-----NNYDRAVINTVPYDVVHRWYTA
              310       320       330            340       350     

              370                                                  
pF1KE0 RHFVSGTSIEHRGSLI                                            
                                                                   
CCDS14 HRTLTIELRRPENEFWVKLKPGRVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTAR
         360       370       380       390       400       410     

>>CCDS7862.1 BBOX1 gene_id:8424|Hs108|chr11               (387 aa)
 initn: 392 init1: 223 opt: 431  Z-score: 557.2  bits: 111.8 E(32554): 1e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)

               50        60        70        80        90       100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
                                     .  :::::.:  ..:: .... :.: . ..
CCDS78   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
                 10        20        30        40        50        

              110       120       130       140       150          
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
       :. :  : . .:.  ...:::: : .... .:: :  .  : .  .: ....    :  .
CCDS78 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
       60        70        80        90       100       110        

      160       170       180       190       200       210        
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
       . :.:..: .. :. .:   :.:...   ::. . ..     .. ::..:....  :.::
CCDS78 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
      120       130       140       150       160       170        

      220       230       240       250       260       270        
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
       . :   . .. ...:::   :. :::   ...: :.:..::.:.  ::: . .:::: . 
CCDS78 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
      180       190       200       210       220       230        

      280       290       300       310       320       330        
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
       ... .. :. :..::                                             
CCDS78 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
      240       250       260       270       280       290        




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:53:19 2016 done: Fri Nov  4 01:53:20 2016
 Total Scan time:  2.670 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com