Result of FASTA (ccds) for
pFN21AB6531
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6531, 366 aa
1>>>pF1KB6531 366 - 366 aa - 366 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2058+/-0.000818; mu= 8.1957+/- 0.049
mean_var=109.4918+/-21.810, 0's: 0 Z-trim(111.0): 31 B-trim: 430 in 1/52
Lambda= 0.122570
statistics sampled from 11996 (12026) to 11996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.369), width: 16
Scan time: 3.170
The best scores are: opt bits E(32554)
CCDS8861.1 TARBP2 gene_id:6895|Hs108|chr12 ( 366) 2424 439.0 3.1e-123
CCDS41791.1 TARBP2 gene_id:6895|Hs108|chr12 ( 345) 2284 414.2 8.4e-116
CCDS46460.1 PRKRA gene_id:8575|Hs108|chr2 ( 302) 332 69.0 6.1e-12
CCDS46461.1 PRKRA gene_id:8575|Hs108|chr2 ( 288) 329 68.5 8.4e-12
CCDS2279.1 PRKRA gene_id:8575|Hs108|chr2 ( 313) 329 68.5 9.1e-12
>>CCDS8861.1 TARBP2 gene_id:6895|Hs108|chr12 (366 aa)
initn: 2424 init1: 2424 opt: 2424 Z-score: 2325.8 bits: 439.0 E(32554): 3.1e-123
Smith-Waterman score: 2424; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)
10 20 30 40 50 60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
310 320 330 340 350 360
pF1KB6 IMAGSK
::::::
CCDS88 IMAGSK
>>CCDS41791.1 TARBP2 gene_id:6895|Hs108|chr12 (345 aa)
initn: 2284 init1: 2284 opt: 2284 Z-score: 2192.4 bits: 414.2 E(32554): 8.4e-116
Smith-Waterman score: 2284; 100.0% identity (100.0% similar) in 345 aa overlap (22-366:1-345)
10 20 30 40 50 60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
:::::::::::::::::::::::::::::::::::::::
CCDS41 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
10 20 30
70 80 90 100 110 120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
280 290 300 310 320 330
pF1KB6 IMAGSK
::::::
CCDS41 IMAGSK
340
>>CCDS46460.1 PRKRA gene_id:8575|Hs108|chr2 (302 aa)
initn: 949 init1: 325 opt: 332 Z-score: 327.9 bits: 69.0 E(32554): 6.1e-12
Smith-Waterman score: 865; 44.3% identity (67.8% similar) in 357 aa overlap (10-366:3-302)
10 20 30 40 50 60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
.: ::. :. .:..:.::::::..:.::: . . :::. ... : : :
CCDS46 MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVP
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : :: .:.
CCDS46 TFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL---MPD
60 70 80 90 100
130 140 150 160 170 180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
:: ..: .: ::.:.::::....::::::::.
CCDS46 --------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLPEYTL
110 120 130
190 200 210 220 230 240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
.::.::::..:.: ::.: :.: :.:.::: :::::: :.: . ... :
CCDS46 SQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------SNISP
140 150 160 170 180
250 260 270 280 290 300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
.. :.: : .. ... :::: ::::: :::: :. :: :. ..:::
CCDS46 EN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--QLLSE
190 200 210 220 230
310 320 330 340 350 360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
...::.:...::::.::: .: :::.::::.: ::::::. . :...::. ::::::
CCDS46 IAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLK
240 250 260 270 280 290
pF1KB6 IMAGSK
:.: :
CCDS46 IIAERK
300
>>CCDS46461.1 PRKRA gene_id:8575|Hs108|chr2 (288 aa)
initn: 925 init1: 320 opt: 329 Z-score: 325.4 bits: 68.5 E(32554): 8.4e-12
Smith-Waterman score: 839; 44.6% identity (67.8% similar) in 345 aa overlap (22-366:1-288)
10 20 30 40 50 60
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQP
:..:.::::::..:.::: . . :::. ... : : :
CCDS46 MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVP
10 20 30
70 80 90 100 110 120
pF1KB6 NFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDSSLPE
.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : :: .:.
CCDS46 TFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL---MPD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 DIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLPEYTV
:: ..: .: ::.:.::::....::::::::.
CCDS46 --------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLPEYTL
100 110 120
190 200 210 220 230 240
pF1KB6 TQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGNEVEP
.::.::::..:.: ::.: :.: :.:.::: :::::: :.: . ... :
CCDS46 SQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------SNISP
130 140 150 160 170
250 260 270 280 290 300
pF1KB6 DDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCRVLSE
.. :.: : .. ... :::: ::::: :::: :. :: :. ..:::
CCDS46 EN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--QLLSE
180 190 200 210 220
310 320 330 340 350 360
pF1KB6 LSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRALQYLK
...::.:...::::.::: .: :::.::::.: ::::::. . :...::. ::::::
CCDS46 IAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLK
230 240 250 260 270 280
pF1KB6 IMAGSK
:.: :
CCDS46 IIAERK
>>CCDS2279.1 PRKRA gene_id:8575|Hs108|chr2 (313 aa)
initn: 931 init1: 320 opt: 329 Z-score: 324.8 bits: 68.5 E(32554): 9.1e-12
Smith-Waterman score: 848; 44.3% identity (67.6% similar) in 352 aa overlap (15-366:19-313)
10 20 30 40 50
pF1KB6 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ
: :. .:..:.::::::..:.::: . . :::. ... :
CCDS22 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS
: :.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : ::
CCDS22 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL--
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP
.:. :: :: ... ::.:.::::....:::::
CCDS22 -MPD--------------PS----------KQP-----KNQLNPIGSLQELAIHHGWRLP
120 130 140
180 190 200 210 220 230
pF1KB6 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN
:::..::.::::..:.: ::.: :.: :.:.::: :::::: :.: . .
CCDS22 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S
150 160 170 180 190
240 250 260 270 280 290
pF1KB6 EVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCR
.. :.. :.: : .. ... :::: ::::: :::: :. :: :. .
CCDS22 NISPEN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--Q
200 210 220 230 240
300 310 320 330 340 350
pF1KB6 VLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRAL
.:::...::.:...::::.::: .: :::.::::.: ::::::. . :...::. ::
CCDS22 LLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNAL
250 260 270 280 290 300
360
pF1KB6 QYLKIMAGSK
:::::.: :
CCDS22 QYLKIIAERK
310
366 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:17:27 2016 done: Sat Nov 5 01:17:28 2016
Total Scan time: 3.170 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]