Result of FASTA (ccds) for pFN21AB7321
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7321, 1199 aa
  1>>>pF1KB7321 1199 - 1199 aa - 1199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0238+/-0.00136; mu= 8.1791+/- 0.081
 mean_var=124.4536+/-25.087, 0's: 0 Z-trim(103.3): 67  B-trim: 53 in 1/49
 Lambda= 0.114966
 statistics sampled from 7298 (7323) to 7298 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.225), width:  16
 Scan time:  4.840

The best scores are:                                      opt bits E(32554)
CCDS34937.1 TAF2 gene_id:6873|Hs108|chr8           (1199) 8092 1354.8       0


>>CCDS34937.1 TAF2 gene_id:6873|Hs108|chr8                (1199 aa)
 initn: 8092 init1: 8092 opt: 8092  Z-score: 7256.9  bits: 1354.8 E(32554):    0
Smith-Waterman score: 8092; 99.9% identity (100.0% similar) in 1199 aa overlap (1-1199:1-1199)

               10        20        30        40        50        60
pF1KB7 MPLTGVEPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPLTGVEPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NRIKLNSKQCRIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NRIKLNSKQCRIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 YSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFIS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 RMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 GKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLA
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS34 GKEKDNPASHLHFSIKHPHTLSWEYYSMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 STASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 STASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 RNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB7 KKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVV
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB7 AQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMK
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB7 SLFTRMFCCKSCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLFTRMFCCKSCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIK
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB7 YNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNME
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB7 KLLPSYRHTITVSCLRAIRVLQKNGHVPSDPALFKSYAEYGHFVDIRIAALEAVVDYTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KLLPSYRHTITVSCLRAIRVLQKNGHVPSDPALFKSYAEYGHFVDIRIAALEAVVDYTKV
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB7 DRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSG
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB7 TSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPESVAGNQEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPESVAGNQEA
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB7 ANNPSSHPQLVGFQNPFSSSQDEEEIDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ANNPSSHPQLVGFQNPFSSSQDEEEIDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPAS
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB7 SRSALIPQHSAGCDSTPTTKPQWSLELARKGTGKEQAPLEMSMHPAASAPLSVFTKESTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SRSALIPQHSAGCDSTPTTKPQWSLELARKGTGKEQAPLEMSMHPAASAPLSVFTKESTA
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190         
pF1KB7 SKHSDHHHHHHHEHKKKKKKHKHKHKHKHKHDSKEKDKEPFTFSSPASGRSIRSPSLSD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SKHSDHHHHHHHEHKKKKKKHKHKHKHKHKHDSKEKDKEPFTFSSPASGRSIRSPSLSD
             1150      1160      1170      1180      1190         




1199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:36:35 2016 done: Mon Nov  7 03:36:36 2016
 Total Scan time:  4.840 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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