Result of FASTA (omim) for pFN21AB8856
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8856, 90 aa
  1>>>pF1KB8856 90 - 90 aa - 90 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9194+/-0.000309; mu= 5.6084+/- 0.019
 mean_var=69.3896+/-13.833, 0's: 0 Z-trim(116.7): 93  B-trim: 84 in 1/53
 Lambda= 0.153967
 statistics sampled from 28067 (28166) to 28067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.33), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(85289)
NP_055439 (OMIM: 114110) protein S100-A6 [Homo sap (  90)  571 135.1 1.5e-32
XP_016857522 (OMIM: 114110) PREDICTED: protein S10 (  90)  571 135.1 1.5e-32
NP_062427 (OMIM: 114210) protein S100-A4 [Homo sap ( 101)  318 78.9 1.4e-15
NP_002952 (OMIM: 114210) protein S100-A4 [Homo sap ( 101)  318 78.9 1.4e-15
XP_016857521 (OMIM: 176991) PREDICTED: protein S10 (  92)  304 75.8 1.1e-14
NP_002953 (OMIM: 176991) protein S100-A5 [Homo sap (  92)  304 75.8 1.1e-14
XP_016857520 (OMIM: 176991) PREDICTED: protein S10 (  92)  304 75.8 1.1e-14
XP_011508162 (OMIM: 176991) PREDICTED: protein S10 ( 104)  304 75.8 1.2e-14
XP_016857519 (OMIM: 176991) PREDICTED: protein S10 ( 110)  304 75.8 1.3e-14
XP_016857518 (OMIM: 176991) PREDICTED: protein S10 ( 133)  304 75.8 1.5e-14
NP_005969 (OMIM: 176993) protein S100-A2 [Homo sap (  97)  273 68.9 1.3e-12
NP_006262 (OMIM: 176940) protein S100-A1 [Homo sap (  94)  245 62.7 9.8e-11
NP_002951 (OMIM: 176992) protein S100-A3 [Homo sap ( 101)  236 60.7 4.2e-10
NP_006263 (OMIM: 176990) protein S100-B [Homo sapi (  92)  228 58.9 1.3e-09
XP_016883913 (OMIM: 176990) PREDICTED: protein S10 (  92)  228 58.9 1.3e-09
XP_016864660 (OMIM: 610103) PREDICTED: protein S10 (  99)  221 57.4 4.1e-09
XP_011541543 (OMIM: 610103) PREDICTED: protein S10 (  99)  221 57.4 4.1e-09
NP_570128 (OMIM: 610103) protein S100-Z [Homo sapi (  99)  221 57.4 4.1e-09
XP_011541542 (OMIM: 610103) PREDICTED: protein S10 (  99)  221 57.4 4.1e-09
XP_016864662 (OMIM: 610103) PREDICTED: protein S10 (  99)  221 57.4 4.1e-09
XP_016864661 (OMIM: 610103) PREDICTED: protein S10 (  99)  221 57.4 4.1e-09
XP_011541547 (OMIM: 610103) PREDICTED: protein S10 (  99)  221 57.4 4.1e-09
XP_011541546 (OMIM: 610103) PREDICTED: protein S10 (  99)  221 57.4 4.1e-09
XP_011541541 (OMIM: 610103) PREDICTED: protein S10 (  99)  221 57.4 4.1e-09
NP_005971 (OMIM: 600614) protein S100-P [Homo sapi (  95)  209 54.7 2.5e-08
NP_005612 (OMIM: 603112) protein S100-A12 [Homo sa (  92)  186 49.6 8.4e-07
NP_005611 (OMIM: 603114) protein S100-A11 [Homo sa ( 105)  178 47.8 3.3e-06
NP_002956 (OMIM: 123886) protein S100-A9 [Homo sap ( 114)  176 47.4 4.8e-06
NP_002957 (OMIM: 114085) protein S100-A10 [Homo sa (  97)  151 41.8 0.00019
NP_004048 (OMIM: 302020) protein S100-G [Homo sapi (  79)  148 41.1 0.00026
XP_016885330 (OMIM: 302020) PREDICTED: protein S10 (  79)  148 41.1 0.00026
NP_001019382 (OMIM: 601989) protein S100-A13 [Homo (  98)  147 40.9 0.00036
XP_005245491 (OMIM: 601989) PREDICTED: protein S10 (  98)  147 40.9 0.00036
NP_005970 (OMIM: 601989) protein S100-A13 [Homo sa (  98)  147 40.9 0.00036
XP_011508164 (OMIM: 601989) PREDICTED: protein S10 (  98)  147 40.9 0.00036
XP_016857523 (OMIM: 601989) PREDICTED: protein S10 (  98)  147 40.9 0.00036
XP_016857525 (OMIM: 601989) PREDICTED: protein S10 (  98)  147 40.9 0.00036
NP_001019383 (OMIM: 601989) protein S100-A13 [Homo (  98)  147 40.9 0.00036
XP_016857524 (OMIM: 601989) PREDICTED: protein S10 (  98)  147 40.9 0.00036
NP_001019381 (OMIM: 601989) protein S100-A13 [Homo (  98)  147 40.9 0.00036
XP_011508166 (OMIM: 601989) PREDICTED: protein S10 (  98)  147 40.9 0.00036
NP_001019384 (OMIM: 601989) protein S100-A13 [Homo (  98)  147 40.9 0.00036
XP_011508165 (OMIM: 601989) PREDICTED: protein S10 (  98)  147 40.9 0.00036
NP_001306130 (OMIM: 123885) protein S100-A8 isofor (  93)  141 39.6 0.00087
NP_002955 (OMIM: 123885) protein S100-A8 isoform d (  93)  141 39.6 0.00087
NP_001306127 (OMIM: 123885) protein S100-A8 isofor ( 101)  141 39.6 0.00094
NP_001306126 (OMIM: 123885) protein S100-A8 isofor ( 116)  141 39.6  0.0011
NP_001306125 (OMIM: 123885) protein S100-A8 isofor ( 117)  141 39.6  0.0011
XP_011507833 (OMIM: 616284) PREDICTED: filaggrin-2 (2239)  158 43.8  0.0012
NP_001014364 (OMIM: 616284) filaggrin-2 [Homo sapi (2391)  158 43.8  0.0012


>>NP_055439 (OMIM: 114110) protein S100-A6 [Homo sapiens  (90 aa)
 initn: 571 init1: 571 opt: 571  Z-score: 705.4  bits: 135.1 E(85289): 1.5e-32
Smith-Waterman score: 571; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
               10        20        30        40        50        60

               70        80        90
pF1KB8 DRNKDQEVNFQEYVTFLGALALIYNEALKG
       ::::::::::::::::::::::::::::::
NP_055 DRNKDQEVNFQEYVTFLGALALIYNEALKG
               70        80        90

>>XP_016857522 (OMIM: 114110) PREDICTED: protein S100-A6  (90 aa)
 initn: 571 init1: 571 opt: 571  Z-score: 705.4  bits: 135.1 E(85289): 1.5e-32
Smith-Waterman score: 571; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
               10        20        30        40        50        60

               70        80        90
pF1KB8 DRNKDQEVNFQEYVTFLGALALIYNEALKG
       ::::::::::::::::::::::::::::::
XP_016 DRNKDQEVNFQEYVTFLGALALIYNEALKG
               70        80        90

>>NP_062427 (OMIM: 114210) protein S100-A4 [Homo sapiens  (101 aa)
 initn: 299 init1: 188 opt: 318  Z-score: 400.9  bits: 78.9 E(85289): 1.4e-15
Smith-Waterman score: 318; 50.0% identity (81.5% similar) in 92 aa overlap (1-90:1-92)

               10        20        30        40          50        
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELT--IGSKLQDAEIARLME
       :::::..:. ..:. ::::::.::::  :.:.:::::. .::   .:.. ..: . .:: 
NP_062 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS
               10        20        30        40        50        60

       60        70        80        90         
pF1KB8 DLDRNKDQEVNFQEYVTFLGALALIYNEALKG         
       .:: :.:.::.:::: .::. .:.. :: ..:         
NP_062 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDKQPRKK
               70        80        90       100 

>>NP_002952 (OMIM: 114210) protein S100-A4 [Homo sapiens  (101 aa)
 initn: 299 init1: 188 opt: 318  Z-score: 400.9  bits: 78.9 E(85289): 1.4e-15
Smith-Waterman score: 318; 50.0% identity (81.5% similar) in 92 aa overlap (1-90:1-92)

               10        20        30        40          50        
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELT--IGSKLQDAEIARLME
       :::::..:. ..:. ::::::.::::  :.:.:::::. .::   .:.. ..: . .:: 
NP_002 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS
               10        20        30        40        50        60

       60        70        80        90         
pF1KB8 DLDRNKDQEVNFQEYVTFLGALALIYNEALKG         
       .:: :.:.::.:::: .::. .:.. :: ..:         
NP_002 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDKQPRKK
               70        80        90       100 

>>XP_016857521 (OMIM: 176991) PREDICTED: protein S100-A5  (92 aa)
 initn: 299 init1: 184 opt: 304  Z-score: 384.7  bits: 75.8 E(85289): 1.1e-14
Smith-Waterman score: 304; 53.5% identity (81.4% similar) in 86 aa overlap (1-86:1-85)

               10        20        30        40        50        60
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
       :  ::..:.  .:. :::::::::.: :::.:::::::.::: .: ..... :  ::..:
XP_016 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLG-EMKESSIDDLMKSL
               10        20        30        40         50         

               70        80        90   
pF1KB8 DRNKDQEVNFQEYVTFLGALALIYNEALKG   
       :.:.:::..:.:: .::  : . ::.       
XP_016 DKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDNK
      60        70        80        90  

>>NP_002953 (OMIM: 176991) protein S100-A5 [Homo sapiens  (92 aa)
 initn: 299 init1: 184 opt: 304  Z-score: 384.7  bits: 75.8 E(85289): 1.1e-14
Smith-Waterman score: 304; 53.5% identity (81.4% similar) in 86 aa overlap (1-86:1-85)

               10        20        30        40        50        60
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
       :  ::..:.  .:. :::::::::.: :::.:::::::.::: .: ..... :  ::..:
NP_002 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLG-EMKESSIDDLMKSL
               10        20        30        40         50         

               70        80        90   
pF1KB8 DRNKDQEVNFQEYVTFLGALALIYNEALKG   
       :.:.:::..:.:: .::  : . ::.       
NP_002 DKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDNK
      60        70        80        90  

>>XP_016857520 (OMIM: 176991) PREDICTED: protein S100-A5  (92 aa)
 initn: 299 init1: 184 opt: 304  Z-score: 384.7  bits: 75.8 E(85289): 1.1e-14
Smith-Waterman score: 304; 53.5% identity (81.4% similar) in 86 aa overlap (1-86:1-85)

               10        20        30        40        50        60
pF1KB8 MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL
       :  ::..:.  .:. :::::::::.: :::.:::::::.::: .: ..... :  ::..:
XP_016 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLG-EMKESSIDDLMKSL
               10        20        30        40         50         

               70        80        90   
pF1KB8 DRNKDQEVNFQEYVTFLGALALIYNEALKG   
       :.:.:::..:.:: .::  : . ::.       
XP_016 DKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDNK
      60        70        80        90  

>>XP_011508162 (OMIM: 176991) PREDICTED: protein S100-A5  (104 aa)
 initn: 299 init1: 184 opt: 304  Z-score: 383.8  bits: 75.8 E(85289): 1.2e-14
Smith-Waterman score: 304; 53.5% identity (81.4% similar) in 86 aa overlap (1-86:13-97)

                           10        20        30        40        
pF1KB8             MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKL
                   :  ::..:.  .:. :::::::::.: :::.:::::::.::: .: ..
XP_011 MGHSSISELHTVMETPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLG-EM
               10        20        30        40        50          

       50        60        70        80        90   
pF1KB8 QDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG   
       ... :  ::..::.:.:::..:.:: .::  : . ::.       
XP_011 KESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDNK
      60        70        80        90       100    

>>XP_016857519 (OMIM: 176991) PREDICTED: protein S100-A5  (110 aa)
 initn: 299 init1: 184 opt: 304  Z-score: 383.4  bits: 75.8 E(85289): 1.3e-14
Smith-Waterman score: 304; 53.5% identity (81.4% similar) in 86 aa overlap (1-86:19-103)

                                 10        20        30        40  
pF1KB8                   MACPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKEL
                         :  ::..:.  .:. :::::::::.: :::.:::::::.:::
XP_016 MPAAWILWAHSHSELHTVMETPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKEL
               10        20        30        40        50        60

             50        60        70        80        90   
pF1KB8 TIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG   
        .: ..... :  ::..::.:.:::..:.:: .::  : . ::.       
XP_016 CLG-EMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDNK
                70        80        90       100       110

>>XP_016857518 (OMIM: 176991) PREDICTED: protein S100-A5  (133 aa)
 initn: 308 init1: 184 opt: 304  Z-score: 382.1  bits: 75.8 E(85289): 1.5e-14
Smith-Waterman score: 304; 53.5% identity (81.4% similar) in 86 aa overlap (1-86:42-126)

                                             10        20        30
pF1KB8                               MACPLDQAIGLLVAIFHKYSGREGDKHTLS
                                     :  ::..:.  .:. :::::::::.: :::
XP_016 REIKAEGSEREAMPAAWILWAHSHSELHTVMETPLEKALTTMVTTFHKYSGREGSKLTLS
              20        30        40        50        60        70 

               40        50        60        70        80        90
pF1KB8 KKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG
       .:::::::.::: .: ..... :  ::..::.:.:::..:.:: .::  : . ::.    
XP_016 RKELKELIKKELCLG-EMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTMLCMAYNDFFLE
              80         90       100       110       120       130

XP_016 DNK
          




90 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:34:34 2016 done: Sat Nov  5 00:34:35 2016
 Total Scan time:  3.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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