Result of FASTA (omim) for
pFN21AE0134
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0134, 214 aa
1>>>pF1KE0134 214 - 214 aa - 214 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8060+/-0.000352; mu= 16.4592+/- 0.022
mean_var=61.5132+/-12.766, 0's: 0 Z-trim(114.1): 7 B-trim: 1190 in 1/50
Lambda= 0.163527
statistics sampled from 23747 (23754) to 23747 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.279), width: 16
Scan time: 4.820
The best scores are: opt bits E(85289)
NP_006004 (OMIM: 300847,312173) 60S ribosomal prot ( 214) 1494 360.7 1.1e-99
NP_001290553 (OMIM: 300847,312173) 60S ribosomal p ( 214) 1494 360.7 1.1e-99
NP_001290554 (OMIM: 300847,312173) 60S ribosomal p ( 214) 1494 360.7 1.1e-99
NP_001243509 (OMIM: 300847,312173) 60S ribosomal p ( 178) 1037 252.8 2.6e-67
NP_001243506 (OMIM: 300847,312173) 60S ribosomal p ( 216) 789 194.3 1.2e-49
NP_001290555 (OMIM: 300847,312173) 60S ribosomal p ( 145) 785 193.3 1.7e-49
>>NP_006004 (OMIM: 300847,312173) 60S ribosomal protein (214 aa)
initn: 1494 init1: 1494 opt: 1494 Z-score: 1911.0 bits: 360.7 E(85289): 1.1e-99
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
130 140 150 160 170 180
190 200 210
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
::::::::::::::::::::::::::::::::::
NP_006 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
190 200 210
>>NP_001290553 (OMIM: 300847,312173) 60S ribosomal prote (214 aa)
initn: 1494 init1: 1494 opt: 1494 Z-score: 1911.0 bits: 360.7 E(85289): 1.1e-99
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
130 140 150 160 170 180
190 200 210
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
::::::::::::::::::::::::::::::::::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
190 200 210
>>NP_001290554 (OMIM: 300847,312173) 60S ribosomal prote (214 aa)
initn: 1494 init1: 1494 opt: 1494 Z-score: 1911.0 bits: 360.7 E(85289): 1.1e-99
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
130 140 150 160 170 180
190 200 210
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
::::::::::::::::::::::::::::::::::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
190 200 210
>>NP_001243509 (OMIM: 300847,312173) 60S ribosomal prote (178 aa)
initn: 1239 init1: 1037 opt: 1037 Z-score: 1329.4 bits: 252.8 E(85289): 2.6e-67
Smith-Waterman score: 1171; 83.2% identity (83.2% similar) in 214 aa overlap (1-214:1-178)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
:::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVP---------------------------------
10 20
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---ALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
30 40 50 60 70 80
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
90 100 110 120 130 140
190 200 210
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
::::::::::::::::::::::::::::::::::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
150 160 170
>>NP_001243506 (OMIM: 300847,312173) 60S ribosomal prote (216 aa)
initn: 789 init1: 789 opt: 789 Z-score: 1012.0 bits: 194.3 E(85289): 1.2e-49
Smith-Waterman score: 789; 94.9% identity (95.8% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
:::::::::::::::::::::::::::::::::::::::::::::::::: . ::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRSTSQRSGASP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
NP_001 SSMLMNLKTWWLKSGSSQMAVGSSTSPVVALWTSGGPCTHEGFQCAAPLLILTNKFYFLS
130 140 150 160 170 180
>>NP_001290555 (OMIM: 300847,312173) 60S ribosomal prote (145 aa)
initn: 783 init1: 783 opt: 785 Z-score: 1009.4 bits: 193.3 E(85289): 1.7e-49
Smith-Waterman score: 785; 90.5% identity (92.9% similar) in 126 aa overlap (1-125:1-126)
10 20 30 40 50 60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
:::::::::::::::::::::::::::::::::::::::::::::::::: . : :
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRHARCLWKAPG
70 80 90 100 110 120
130 140 150 160 170
pF1KE0 K-PQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNAD
. ::.
NP_001 HCGQGSHWPSYHVHPHQAAEQGACD
130 140
214 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:12:43 2016 done: Fri Nov 4 01:12:43 2016
Total Scan time: 4.820 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]