(Circular) (Six-base) MAPSORT of: pFN21AB6879.seq Check: 3598 from: 1 to: 5245 pFN21AB6879 5245 bp With 182 enzymes: SgfI * October 20, 2009 10:44 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3055 278 Size: 53 83 186 936 1519 2468 Fragments arranged by size: 2468 1519 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2588 1937 Size: 651 4594 Acc65I G'GTAC_C Cuts at: 2566 2566 Size: 5245 AclI AA'CG_TT Cuts at: 1563 3372 3745 1563 Size: 1809 373 3063 Fragments arranged by size: 3063 1809 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3308 4692 4960 1632 Size: 1676 1384 268 1917 Fragments arranged by size: 1917 1676 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5048 AflIII A'CryG_T Cuts at: 1203 4144 5121 1203 Size: 2941 977 1327 Fragments arranged by size: 2941 1327 977 AgeI A'CCGG_T Cuts at: 4076 4076 Size: 5245 AhdI GACnn_n'nnGTC Cuts at: 3974 3974 Size: 5245 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5245 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5245 AlwNI CAG_nnn'CTG Cuts at: 2167 2988 4560 2167 Size: 821 1572 2852 Fragments arranged by size: 2852 1572 821 ApaI G_GGCC'C Cuts at: 2036 2036 Size: 5245 ApaLI G'TGCA_C Cuts at: 3302 4458 3302 Size: 1156 4089 ApoI r'AATT_y Cuts at: 1493 2554 2780 2932 5041 1493 Size: 1061 226 152 2109 1697 Fragments arranged by size: 2109 1697 1061 226 152 AseI AT'TA_AT Cuts at: 160 1032 3799 160 Size: 872 2767 1606 Fragments arranged by size: 2767 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5245 AvaI C'yCGr_G Cuts at: 1870 1943 2106 2570 1870 Size: 73 163 464 4545 Fragments arranged by size: 4545 464 163 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2436 2469 2436 Size: 33 5212 BamHI G'GATC_C Cuts at: 2269 2575 2942 2269 Size: 306 367 4572 Fragments arranged by size: 4572 367 306 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2566 4021 618 Size: 325 217 627 779 1455 1842 Fragments arranged by size: 1842 1455 779 627 325 217 BanII G_rGCy'C Cuts at: 1391 2036 2564 1391 Size: 645 528 4072 Fragments arranged by size: 4072 645 528 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2147 2407 928 Size: 971 248 260 3766 Fragments arranged by size: 3766 971 260 248 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3436 3470 1903 Size: 34 1499 34 3678 Fragments arranged by size: 3678 1499 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3137 4347 3137 Size: 1210 4035 BclI T'GATC_A Cuts at: 1548 1548 Size: 5245 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2185 2301 3856 Size: 107 122 71 631 605 513 116 1555 Cuts at: 3856 136 Size: 1525 Fragments arranged by size: 1555 1525 631 605 513 122 116 107 71 BglII A'GATC_T Cuts at: 5240 5240 Size: 5245 BlpI GC'TnA_GC Cuts at: 2662 2662 Size: 5245 Bme1580I G_kGCm'C Cuts at: 1790 2036 3306 4462 1790 Size: 246 1270 1156 2573 Fragments arranged by size: 2573 1270 1156 246 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5245 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2976 3934 442 Size: 416 53 83 399 24 1559 958 1753 Fragments arranged by size: 1753 1559 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5245 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2331 2331 Size: 5245 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2189 2464 3905 1239 Size: 950 275 1441 2579 Fragments arranged by size: 2579 1441 950 275 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3370 4235 4533 3370 Size: 865 298 4082 Fragments arranged by size: 4082 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2302 3908 882 Size: 617 803 1606 2219 Fragments arranged by size: 2219 1606 803 617 BsaAI yAC'GTr Cuts at: 493 1204 3036 493 Size: 711 1832 2702 Fragments arranged by size: 2702 1832 711 BsaBI GATnn'nnATC Cuts at: 5239 5239 Size: 5245 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3052 3434 4069 275 Size: 53 83 186 936 1519 382 635 1451 Fragments arranged by size: 1519 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2317 3678 4076 4350 4497 4908 2317 Size: 1361 398 274 147 411 2654 Fragments arranged by size: 2654 1361 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2462 2492 1178 Size: 30 165 30 1059 30 3931 Fragments arranged by size: 3931 1059 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2033 2036 1186 Size: 847 3 4395 Fragments arranged by size: 4395 847 3 BseYI C'CCAG_C Cuts at: 2210 2473 4448 4944 2210 Size: 263 1975 496 2511 Fragments arranged by size: 2511 1975 496 263 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4672 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2695 3456 4484 1540 Size: 275 186 694 761 1028 2301 Fragments arranged by size: 2301 1028 761 694 275 186 BsiHKAI G_wGCw'C Cuts at: 3306 3391 4462 3306 Size: 85 1071 4089 Fragments arranged by size: 4089 1071 85 BsmI GAATG_Cn' Cuts at: 2756 2849 2756 Size: 93 5152 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2036 2564 3306 3391 4462 1391 Size: 399 246 528 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 528 399 246 85 BspEI T'CCGG_A Cuts at: 2317 4908 2317 Size: 2591 2654 BspHI T'CATG_A Cuts at: 3134 4864 3134 Size: 1730 3515 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2600 844 Size: 1756 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2056 3132 1394 Size: 429 233 1076 3507 Fragments arranged by size: 3507 1076 429 233 BsrDI GCAATG_nn' Cuts at: 65 1248 3740 3914 65 Size: 1183 2492 174 1396 Fragments arranged by size: 2492 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3889 4076 1700 Size: 110 2079 187 2869 Fragments arranged by size: 2869 2079 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5245 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5245 BssSI C'ACGA_G Cuts at: 3305 4317 3305 Size: 1012 4233 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5245 BstBI TT'CG_AA Cuts at: 2079 4049 2079 Size: 1970 3275 BstEII G'GTnAC_C Cuts at: 1184 2468 1184 Size: 1284 3961 BstXI CCAn_nnnn'nTGG Cuts at: 2345 2345 Size: 5245 BstYI r'GATC_y Cuts at: 1972 2269 2455 2575 2942 3327 3344 4796 4882 Size: 297 186 120 367 385 17 1452 86 Cuts at: 4882 4894 5240 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 385 367 346 297 186 120 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3754 Fragments arranged by size: 3754 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4506 Fragments arranged by size: 4506 683 56 BtsI GCAGTG_nn' Cuts at: 2761 3555 3575 2761 Size: 794 20 4431 Fragments arranged by size: 4431 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5245 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5210 DraI TTT'AAA Cuts at: 2549 2549 Size: 5245 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4252 809 Size: 507 2936 1802 Fragments arranged by size: 2936 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2131 2147 2177 Size: 54 1425 50 275 18 301 16 30 Cuts at: 2177 2692 3581 5210 8 Size: 515 889 1629 43 Fragments arranged by size: 1629 1425 889 515 301 275 54 50 43 30 18 16 EagI C'GGCC_G Cuts at: 1537 1812 2692 1537 Size: 275 880 4090 Fragments arranged by size: 4090 880 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2504 3175 1353 Size: 1151 671 3423 Fragments arranged by size: 3423 1151 671 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2426 3832 4206 4352 387 Size: 1064 138 837 1406 374 146 1280 Fragments arranged by size: 1406 1280 1064 837 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2189 2464 3308 3905 4692 4960 1239 Size: 393 557 275 844 597 787 268 1524 Fragments arranged by size: 1524 844 787 597 557 393 275 268 EcoO109I rG'GnC_Cy Cuts at: 2032 2033 2032 Size: 1 5244 EcoRI G'AATT_C Cuts at: 2554 2932 2554 Size: 378 4867 FspI TGC'GCA Cuts at: 3751 3751 Size: 5245 HaeII r_GCGC'y Cuts at: 1678 4392 1678 Size: 2714 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3886 3918 3960 3992 1373 Size: 32 135 32 2314 32 42 32 2626 Fragments arranged by size: 2626 2314 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2589 2835 669 Size: 988 281 651 246 3079 Fragments arranged by size: 3079 988 651 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5245 HpaI GTT'AAC Cuts at: 2835 2835 Size: 5245 KpnI G_GTAC'C Cuts at: 2570 2570 Size: 5245 MfeI C'AATT_G Cuts at: 2844 2844 Size: 5245 MluI A'CGCG_T Cuts at: 5121 5121 Size: 5245 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4359 4543 1305 Size: 3054 184 2007 Fragments arranged by size: 3054 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2133 2149 10 Size: 54 1425 343 301 16 3106 Fragments arranged by size: 3106 1425 343 301 54 16 MslI CAynn'nnrTG Cuts at: 518 1166 3203 3562 3721 518 Size: 648 2037 359 159 2042 Fragments arranged by size: 2042 2037 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2015 2484 2661 3338 4486 4731 1606 Size: 409 469 177 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 469 409 245 177 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3754 Fragments arranged by size: 3754 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5245 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5245 NotI GC'GGCC_GC Cuts at: 2692 2692 Size: 5245 NruI TCG'CGA Cuts at: 2052 2052 Size: 5245 NspI r_CATG'y Cuts at: 1132 1229 2603 4148 1132 Size: 97 1374 1545 2229 Fragments arranged by size: 2229 1545 1374 97 PasI CC'CwG_GG Cuts at: 1348 2299 1348 Size: 951 4294 PciI A'CATG_T Cuts at: 4144 4144 Size: 5245 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5245 PmeI GTTT'AAAC Cuts at: 2549 2549 Size: 5245 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3314 3346 4827 4859 3314 Size: 32 1481 32 3700 Fragments arranged by size: 3700 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5245 PsiI TTA'TAA Cuts at: 2815 2815 Size: 5245 PspOMI G'GGCC_C Cuts at: 2032 2032 Size: 5245 PstI C_TGCA'G Cuts at: 830 2597 830 Size: 1767 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5245 PvuII CAG'CTG Cuts at: 2484 2484 Size: 5245 SalI G'TCGA_C Cuts at: 1936 2587 1936 Size: 651 4594 SbfI CC_TGCA'GG Cuts at: 2597 2597 Size: 5245 ScaI AGT'ACT Cuts at: 3493 5205 3493 Size: 1712 3533 SfcI C'TryA_G Cuts at: 826 1045 2593 3728 4409 4600 826 Size: 219 1548 1135 681 191 1471 Fragments arranged by size: 1548 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5245 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5245 SmaI CCC'GGG Cuts at: 1872 2572 1872 Size: 700 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3349 4250 4512 820 Size: 197 926 1406 901 262 1553 Fragments arranged by size: 1553 1406 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3036 493 Size: 2543 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5245 SphI G_CATG'C Cuts at: 1132 2603 1132 Size: 1471 3774 SspI AAT'ATT Cuts at: 5 52 3169 5 Size: 47 3117 2081 Fragments arranged by size: 3117 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5245 StyI C'CwwG_G Cuts at: 513 1065 2004 2684 513 Size: 552 939 680 3074 Fragments arranged by size: 3074 939 680 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2487 3272 3289 3442 3627 4072 325 Size: 1255 907 785 17 153 185 445 1498 Fragments arranged by size: 1498 1255 907 785 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2139 3491 5203 Size: 274 80 33 51 1443 162 1352 1712 Cuts at: 5203 96 Size: 138 Fragments arranged by size: 1712 1443 1352 274 162 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2462 2494 5205 5237 2462 Size: 32 2711 32 2470 Fragments arranged by size: 2711 2470 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 2466 1316 Size: 1150 4095 XbaI T'CTAG_A Cuts at: 2581 2581 Size: 5245 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2372 2481 2372 Size: 109 5136 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5245 XmaI C'CCGG_G Cuts at: 1870 2570 1870 Size: 700 4545 XmnI GAAnn'nnTTC Cuts at: 3374 3374 Size: 5245 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3053 276 Size: 53 83 186 936 1519 2468 Fragments arranged by size: 2468 1519 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NruI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BbeI BbvCI BfrBI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NsiI PacI PfoI PmlI PpuMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI