FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1496, 108 aa 1>>>pF1KE1496 108 - 108 aa - 108 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0211+/-0.000338; mu= 11.0600+/- 0.021 mean_var=77.1126+/-15.429, 0's: 0 Z-trim(116.6): 81 B-trim: 989 in 1/50 Lambda= 0.146053 statistics sampled from 27792 (27896) to 27792 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.327), width: 16 Scan time: 4.220 The best scores are: opt bits E(85289) NP_055063 (OMIM: 603814) E3 ubiquitin-protein liga ( 108) 797 176.6 6.8e-45 NP_055060 (OMIM: 603863) RING-box protein 2 isofor ( 113) 392 91.3 3.4e-19 NP_001002246 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12 NP_001276344 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12 NP_001002248 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12 NP_001276345 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12 NP_057560 (OMIM: 614534) anaphase-promoting comple ( 84) 279 67.4 4.1e-12 NP_001002245 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12 NP_001276343 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12 NP_001276346 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12 NP_001002249 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12 NP_001002247 (OMIM: 614534) anaphase-promoting com ( 84) 279 67.4 4.1e-12 NP_001188299 (OMIM: 603863) RING-box protein 2 iso ( 97) 200 50.8 4.6e-07 NP_899060 (OMIM: 603863) RING-box protein 2 isofor ( 90) 185 47.6 3.9e-06 >>NP_055063 (OMIM: 603814) E3 ubiquitin-protein ligase R (108 aa) initn: 797 init1: 797 opt: 797 Z-score: 926.9 bits: 176.6 E(85289): 6.8e-45 Smith-Waterman score: 797; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 10 20 30 40 50 60 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH :::::::::::::::::::::::::::::::::::::::::::::::: NP_055 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 70 80 90 100 >>NP_055060 (OMIM: 603863) RING-box protein 2 isoform 1 (113 aa) initn: 392 init1: 220 opt: 392 Z-score: 465.5 bits: 91.3 E(85289): 3.4e-19 Smith-Waterman score: 392; 50.5% identity (76.3% similar) in 97 aa overlap (11-107:20-112) 10 20 30 40 50 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMD ::..:: : : : .:::::::.:.::. :.::::: ..:: NP_055 MADVEDGEETCALASHSGSSGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMD 10 20 30 40 50 60 70 80 90 100 pF1KE1 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH :..:::.. .:.:.:.:: :::.:: :.: :.: . ::: ...: :. : NP_055 ACLRCQAENK---QEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK 60 70 80 90 100 110 >>NP_001002246 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12 Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ . ..: ::.:: : : .::.::: . : .:. NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK--- 10 20 30 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH . ...: ..:: :.: ::.::: .::...:: ::. .::.:.. NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001276344 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12 Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ . ..: ::.:: : : .::.::: . : .:. NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK--- 10 20 30 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH . ...: ..:: :.: ::.::: .::...:: ::. .::.:.. NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001002248 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12 Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ . ..: ::.:: : : .::.::: . : .:. NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK--- 10 20 30 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH . ...: ..:: :.: ::.::: .::...:: ::. .::.:.. NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001276345 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12 Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ . ..: ::.:: : : .::.::: . : .:. NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK--- 10 20 30 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH . ...: ..:: :.: ::.::: .::...:: ::. .::.:.. NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_057560 (OMIM: 614534) anaphase-promoting complex su (84 aa) initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12 Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ . ..: ::.:: : : .::.::: . : .:. NP_057 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK--- 10 20 30 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH . ...: ..:: :.: ::.::: .::...:: ::. .::.:.. NP_057 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001002245 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12 Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ . ..: ::.:: : : .::.::: . : .:. NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK--- 10 20 30 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH . ...: ..:: :.: ::.::: .::...:: ::. .::.:.. NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001276343 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12 Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ . ..: ::.:: : : .::.::: . : .:. NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK--- 10 20 30 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH . ...: ..:: :.: ::.::: .::...:: ::. .::.:.. NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001276346 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 270 init1: 139 opt: 279 Z-score: 338.5 bits: 67.4 E(85289): 4.1e-12 Smith-Waterman score: 279; 37.5% identity (67.0% similar) in 88 aa overlap (21-105:2-84) 10 20 30 40 50 60 pF1KE1 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ . ..: ::.:: : : .::.::: . : .:. NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCK--- 10 20 30 70 80 90 100 pF1KE1 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNREWEFQKYGH . ...: ..:: :.: ::.::: .::...:: ::. .::.:.. NP_001 --VPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 108 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:40:23 2016 done: Mon Nov 7 03:40:24 2016 Total Scan time: 4.220 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]