Result of FASTA (omim) for
pFN21AB8899
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8899, 233 aa
1>>>pF1KB8899 233 - 233 aa - 233 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0891+/-0.000314; mu= 11.5251+/- 0.020
mean_var=106.6396+/-21.997, 0's: 0 Z-trim(119.3): 262 B-trim: 1787 in 2/54
Lambda= 0.124198
statistics sampled from 32764 (33075) to 32764 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.388), width: 16
Scan time: 7.030
The best scores are: opt bits E(85289)
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 1616 299.5 3.3e-81
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 589 115.4 7.9e-26
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 589 115.4 7.9e-26
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 589 115.4 7.9e-26
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 589 115.5 9.6e-26
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 513 101.7 7.5e-22
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 513 101.8 1e-21
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 462 92.7 6.5e-19
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 455 91.4 1.3e-18
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 445 89.7 5.1e-18
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 435 87.9 1.8e-17
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 428 86.6 3.9e-17
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 422 85.6 9.1e-17
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 422 85.6 9.1e-17
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 421 85.4 9.9e-17
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 418 84.9 1.7e-16
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 413 83.9 2.4e-16
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 408 83.0 4.9e-16
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 388 79.5 6.7e-15
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 381 78.2 1.4e-14
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 381 78.2 1.4e-14
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 380 78.1 1.8e-14
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 370 76.2 5.4e-14
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 358 73.8 1.3e-13
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 338 70.6 3.8e-12
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 309 65.3 1.1e-10
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 306 64.9 2.2e-10
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 304 64.6 3.1e-10
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 304 64.6 3.1e-10
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 304 64.6 3.1e-10
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 304 64.6 3.1e-10
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 304 64.6 3.1e-10
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 304 64.6 3.1e-10
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 304 64.6 3.1e-10
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 301 63.9 3.1e-10
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 294 62.6 7e-10
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 295 62.9 7.1e-10
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 295 62.9 8.1e-10
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 295 62.9 8.1e-10
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 294 62.7 8.9e-10
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 295 63.0 9.3e-10
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 295 63.0 9.4e-10
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 295 63.0 9.4e-10
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 295 63.0 9.4e-10
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 295 63.0 9.4e-10
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 295 63.0 9.4e-10
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 295 63.0 9.4e-10
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 295 63.0 1e-09
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 291 62.1 1.1e-09
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 295 63.1 1.2e-09
>>NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [Homo (233 aa)
initn: 1616 init1: 1616 opt: 1616 Z-score: 1579.0 bits: 299.5 E(85289): 3.3e-81
Smith-Waterman score: 1616; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)
10 20 30 40 50 60
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
190 200 210 220 230
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 780 init1: 551 opt: 589 Z-score: 584.7 bits: 115.4 E(85289): 7.9e-26
Smith-Waterman score: 815; 57.2% identity (75.8% similar) in 236 aa overlap (1-233:1-224)
10 20 30 40 50
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ
::::::: ::: .: :::.:::::::::..:: : :: .:: :: . :: ... .:
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 QSNSVLACNRASY-EYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSS
... . .::. .:: : :: .:. :. . ::. .: : : :: . : : .
XP_005 PAGG--GYGRAAPCDYGPAPAFYREKE-SACALSGADEQ--PP----FHPEPR-KSDCA-
70 80 90 100
120 130 140 150 160 170
pF1KB8 GQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFN
: :.. : ..: ..:::::::::::: .. .: :::::::::::::::::::::.:
XP_005 -QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
::::::::::::.:::::::::::::::::::::::.::....: :.:. : : .:
XP_005 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 780 init1: 551 opt: 589 Z-score: 584.7 bits: 115.4 E(85289): 7.9e-26
Smith-Waterman score: 815; 57.2% identity (75.8% similar) in 236 aa overlap (1-233:1-224)
10 20 30 40 50
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ
::::::: ::: .: :::.:::::::::..:: : :: .:: :: . :: ... .:
NP_061 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 QSNSVLACNRASY-EYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSS
... . .::. .:: : :: .:. :. . ::. .: : : :: . : : .
NP_061 PAGG--GYGRAAPCDYGPAPAFYREKE-SACALSGADEQ--PP----FHPEPR-KSDCA-
70 80 90 100
120 130 140 150 160 170
pF1KB8 GQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFN
: :.. : ..: ..:::::::::::: .. .: :::::::::::::::::::::.:
NP_061 -QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
::::::::::::.:::::::::::::::::::::::.::....: :.:. : : .:
NP_061 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 780 init1: 551 opt: 589 Z-score: 584.7 bits: 115.4 E(85289): 7.9e-26
Smith-Waterman score: 815; 57.2% identity (75.8% similar) in 236 aa overlap (1-233:1-224)
10 20 30 40 50
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ
::::::: ::: .: :::.:::::::::..:: : :: .:: :: . :: ... .:
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 QSNSVLACNRASY-EYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSS
... . .::. .:: : :: .:. :. . ::. .: : : :: . : : .
XP_005 PAGG--GYGRAAPCDYGPAPAFYREKE-SACALSGADEQ--PP----FHPEPR-KSDCA-
70 80 90 100
120 130 140 150 160 170
pF1KB8 GQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFN
: :.. : ..: ..:::::::::::: .. .: :::::::::::::::::::::.:
XP_005 -QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYN
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 RYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
::::::::::::.:::::::::::::::::::::::.::....: :.:. : : .:
XP_005 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
>>XP_011523029 (OMIM: 142961) PREDICTED: homeobox protei (288 aa)
initn: 764 init1: 551 opt: 589 Z-score: 583.2 bits: 115.5 E(85289): 9.6e-26
Smith-Waterman score: 815; 57.2% identity (75.8% similar) in 236 aa overlap (1-233:65-288)
10 20 30
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQA
::::::: ::: .: :::.:::::::::..
XP_011 GFNAARRSDYKTQQIINPAEQQRPRAPPLPMSSYFVNSTFPVTLASGQESFLGQLPLYSS
40 50 60 70 80 90
40 50 60 70 80
pF1KB8 GY-DALRPFPASYGASSLPDKTYTSPCFYQQSNSVLACNRASY-EYG-ASCFYSDKDLSG
:: : :: .:: :: . :: ... .: ... . .::. .:: : :: .:. :.
XP_011 GYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGG--GYGRAAPCDYGPAPAFYREKE-SA
100 110 120 130 140 150
90 100 110 120 130 140
pF1KB8 ASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCA
. ::. .: : : :: . : : . : :.. : ..: ..::::::::::::
XP_011 CALSGADEQ--PP----FHPEPR-KSDCA--QDKSVFGETEEQKCSTPVYPWMQRMNSCN
160 170 180 190 200
150 160 170 180 190 200
pF1KB8 GAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRR
.. .: :::::::::::::::::::::.:::::::::::::.:::::::::::::::::
XP_011 SSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRR
210 220 230 240 250 260
210 220 230
pF1KB8 MKWKKENKLINSTQPSGEDSEAKAGE
::::::.::....: :.:. : : .:
XP_011 MKWKKESKLLSASQLSAEEEEEKQAE
270 280
>>NP_710160 (OMIM: 142972) homeobox protein Hox-C6 isofo (153 aa)
initn: 521 init1: 488 opt: 513 Z-score: 513.3 bits: 101.7 E(85289): 7.5e-22
Smith-Waterman score: 513; 67.2% identity (81.0% similar) in 116 aa overlap (114-229:21-133)
90 100 110 120 130 140
pF1KB8 DLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRM
: :: ::.. :.: . .:::::::
NP_710 MLSNCRQNTLGHNTQTSIAQDFSSEQGRT---APQDQKASIQIYPWMQRM
10 20 30 40
150 160 170 180 190 200
pF1KB8 NSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF
:: .:. ::. ::::: :.::::::::::::::::::::::::::::::::::::::::
NP_710 NSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF
50 60 70 80 90 100
210 220 230
pF1KB8 QNRRMKWKKENKLINSTQPSGEDSEAKAGE
::::::::::..: .. . .: . :
NP_710 QNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
110 120 130 140 150
>>NP_004494 (OMIM: 142972) homeobox protein Hox-C6 isofo (235 aa)
initn: 714 init1: 488 opt: 513 Z-score: 510.8 bits: 101.8 E(85289): 1e-21
Smith-Waterman score: 696; 49.8% identity (71.6% similar) in 229 aa overlap (1-229:1-215)
10 20 30 40 50 60
pF1KB8 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
:.:::.::.. : .::: : .. : ...:: .: : ..:::. .. :..: . :
NP_004 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAYDPVRHF-STYGAAVAQNRIYSTPFYSPQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
: :.. .:. :.::.. ::..::. . . .: : . : : : :: ::
NP_004 ENVVFSSSRGPYDYGSNSFYQEKDMLS-----NCRQNTLGHNTQTSIAQ----DFSSEQG
60 70 80 90 100
130 140 150 160 170 180
pF1KB8 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
.. . :.: . .::::::::: .:. ::. ::::: :.:::::::::::::::::
NP_004 RTAPQ---DQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYL
110 120 130 140 150 160
190 200 210 220 230
pF1KB8 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
:::::::::::::::::::::::::::::::::..: .. . .: . :
NP_004 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKRE
170 180 190 200 210 220
NP_004 ETEEEKQKE
230
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 492 init1: 444 opt: 462 Z-score: 460.6 bits: 92.7 E(85289): 6.5e-19
Smith-Waterman score: 462; 45.3% identity (66.1% similar) in 192 aa overlap (36-216:71-256)
10 20 30 40 50 60
pF1KB8 VNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLP-DKTYTSPCFYQQSNSV
: . :: ::. : . :..: .: .
NP_061 HSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAAS--ASAAPAEPRYSQPATSTHSPQP
50 60 70 80 90
70 80 90 100 110
pF1KB8 --LACNRASYEYGASCFYSDKDL----SGASP-SGS---GKQRGPGDYLHFSPEQQYKPD
: :. .. :.. .. :. :::: .:: ....: : : .. :
NP_061 DPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTA---SGAEEDAP-
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB8 SSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEF
.:: :..: . . .::::.... . : .:.:.: .:::::::::::::
NP_061 ASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEF
160 170 180 190 200 210
180 190 200 210 220 230
pF1KB8 HFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
:::::::::::::::.::::.:::::::::::::::::.:::
NP_061 HFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
220 230 240 250 260 270
>>NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [Homo (217 aa)
initn: 439 init1: 392 opt: 455 Z-score: 455.1 bits: 91.4 E(85289): 1.3e-18
Smith-Waterman score: 456; 43.3% identity (62.3% similar) in 215 aa overlap (40-233:12-215)
10 20 30 40 50 60
pF1KB8 FPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQSNSVLACNR
..: ::: ..... : .:.. ..: :
NP_004 MSSLYYANTLFSKYPASS---SVFATGAFPEQTSCAFASNP
10 20 30
70 80 90 100 110
pF1KB8 ASYEYGASCFYS-DKDLSGASPSGSGK--QRGPGDY------------LHFSP-EQQYK-
:::. : ...: :.:.: : . : : .: .: ::. .
NP_004 QRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSG
40 50 60 70 80 90
120 130 140 150 160
pF1KB8 --P-DSSSGQG-KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTL
: ::... : : .: . . .::::. :. .::::::::::::
NP_004 VCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSS--------GTDRKRGRQTYTRYQTL
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 ELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSE
:::::::.:::::::::::::..:::::::::::::::::::::::: . . . .:
NP_004 ELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAE
160 170 180 190 200 210
230
pF1KB8 AKAGE
:. :
NP_004 AEEEEEE
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 449 init1: 366 opt: 445 Z-score: 444.5 bits: 89.7 E(85289): 5.1e-18
Smith-Waterman score: 447; 39.1% identity (54.8% similar) in 248 aa overlap (1-231:3-230)
10 20 30 40 50
pF1KB8 MSSYFVN-----PTFPGSLPSGQDSFLG-QLPLYQAGYDALRPFPASYGASSLPDKTY
::::.:: : :: : ..:: : : .: .. ::. : :
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGG--------GAQGADFQPPGLY
10 20 30 40 50
60 70 80 90 100
pF1KB8 TSPCFYQQSNSVLACNRASYEYGASCFYSDKDLS----GASPSGSGKQRG-PGDYLHFSP
: : .: .:.: . : : :.: : . . ::. :
NP_055 PRPDFGEQP------------FGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPP
60 70 80 90 100
110 120 130 140 150 160
pF1KB8 EQQYKP----DSSSGQGKALHDEGADRKYTSPVYPWMQRM--NSCAGAVYGSHGRRGRQT
: . : . :. : . :::::... :: :.. .:.: .
NP_055 APPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTA
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB8 YTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQ
::: :.::::::::::::::::::::::..:::.:::::::::::::::::..:: :.
NP_055 YTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKG
170 180 190 200 210 220
230
pF1KB8 PSGEDSEAKAGE
:. .: ...
NP_055 RSSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
230 240 250
233 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:00:07 2016 done: Sat Nov 5 20:00:08 2016
Total Scan time: 7.030 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]