FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0555, 377 aa 1>>>pF1KE0555 377 - 377 aa - 377 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2405+/-0.000834; mu= 16.5140+/- 0.050 mean_var=55.9507+/-10.964, 0's: 0 Z-trim(106.2): 18 B-trim: 168 in 1/49 Lambda= 0.171463 statistics sampled from 8836 (8839) to 8836 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.272), width: 16 Scan time: 2.780 The best scores are: opt bits E(32554) CCDS4116.1 PGGT1B gene_id:5229|Hs108|chr5 ( 377) 2586 647.8 4.7e-186 CCDS669.1 RABGGTB gene_id:5876|Hs108|chr1 ( 331) 452 119.8 3.4e-27 CCDS9769.1 FNTB gene_id:2342|Hs108|chr14 ( 437) 337 91.4 1.6e-18 >>CCDS4116.1 PGGT1B gene_id:5229|Hs108|chr5 (377 aa) initn: 2586 init1: 2586 opt: 2586 Z-score: 3453.7 bits: 647.8 E(32554): 4.7e-186 Smith-Waterman score: 2586; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377) 10 20 30 40 50 60 pF1KE0 MAATEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MAATEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 LDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 HIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 HIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 ICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 ICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 SEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQS 310 320 330 340 350 360 370 pF1KE0 WKTKDSKQCSENVHIST ::::::::::::::::: CCDS41 WKTKDSKQCSENVHIST 370 >>CCDS669.1 RABGGTB gene_id:5876|Hs108|chr1 (331 aa) initn: 463 init1: 252 opt: 452 Z-score: 601.7 bits: 119.8 E(32554): 3.4e-27 Smith-Waterman score: 477; 30.3% identity (60.6% similar) in 317 aa overlap (40-354:39-323) 10 20 30 40 50 60 pF1KE0 AGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNK : : :.. ...:. .:.. .: .:. CCDS66 IIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 DDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTGL ..:. .: : : ..:: :: . .. : :. .: ... CCDS66 EEILAFIKSCQ----------HECG-------GISASIGHDP---------HLLYTLSAV 70 80 90 100 130 140 150 160 170 180 pF1KE0 SCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS . :. : :... .. . . ...:: ::::: . : : : :: .:: .:.. . CCDS66 QILT-LYDSINVIDVNKVVEYVKGLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLGKLD 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE0 GMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIK .....::: .. :..:.:.. : :::.:. .: . : . ..:..: : . . CCDS66 AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNS----DLLG 170 180 190 200 210 250 260 270 280 290 300 pF1KE0 RWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVG : :: ..: .:::.: :.:::.:: :.::.. ... . :: ::.::. ::. .: CCDS66 WWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRNFILACQDEETG 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE0 GFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQSWKTKDSK ::: : . : .:. ::: ::::. : : :.:.. . .. .:. CCDS66 GFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPEEVLQRVNVQPELVS 280 290 300 310 320 330 370 pF1KE0 QCSENVHIST >>CCDS9769.1 FNTB gene_id:2342|Hs108|chr14 (437 aa) initn: 324 init1: 132 opt: 337 Z-score: 446.0 bits: 91.4 E(32554): 1.6e-18 Smith-Waterman score: 392; 28.4% identity (55.6% similar) in 338 aa overlap (17-336:70-377) 10 20 30 40 pF1KE0 MAATEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETS :: . :..: ....: :. : . : :..: CCDS97 VETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDAS 40 50 60 70 80 90 50 60 70 80 90 100 pF1KE0 RLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFN : . .. : .:..:: . : : . .: . . . :: : . CCDS97 RPWLCYWILHSLELLD--------EPIPQIVATDVCQFLELCQSPEGGFGG--------G 100 110 120 130 140 110 120 130 140 150 160 pF1KE0 PSKAPGTAHPYDSGHIAMTYTGLSCLVILGDDLSR--VNKEACLAGLRALQLEDGSFCAV :.. : :.: ::.... : :.: . . .:.: : : .:. :::: . CCDS97 PGQYP---------HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-M 150 160 170 180 190 170 180 190 200 210 220 pF1KE0 PEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTF :.: :.: .:::. . . : . .. . .: : .....:.. :.:.::: :: CCDS97 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 200 210 220 230 240 250 230 240 250 260 270 280 pF1KE0 CGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ---QNGYHGRPNKPVDTCYSFWVGATLK ::.:.: .. : :. .. : : .: :: ..:..:: :: :: ::::: .. : CCDS97 CGLAALVIL-KRERSLNLKSL---LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLP 260 270 280 290 300 290 300 310 320 pF1KE0 LLK-----------IFQYTNFEKN--RNYILSTQDRLVGGFAKWPDSHPDALHAYFGICG ::. ... :... ..::: . .::. : . : :. . . : CCDS97 LLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSG 310 320 330 340 350 360 330 340 350 360 370 pF1KE0 LSLMEESGICKVHPALNVSTRTSERLLDLHQSWKTKDSKQCSENVHIST ::. .. : CCDS97 LSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPVPGFEELKDE 370 380 390 400 410 420 377 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:41:32 2016 done: Mon Nov 7 03:41:32 2016 Total Scan time: 2.780 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]