FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0453, 227 aa 1>>>pF1KE0453 227 - 227 aa - 227 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0567+/-0.000311; mu= 15.3222+/- 0.019 mean_var=60.5298+/-12.090, 0's: 0 Z-trim(117.2): 23 B-trim: 708 in 2/52 Lambda= 0.164850 statistics sampled from 29045 (29068) to 29045 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.341), width: 16 Scan time: 6.600 The best scores are: opt bits E(85289) NP_008937 (OMIM: 604978) cleavage and polyadenylat ( 227) 1542 374.6 7.5e-104 >>NP_008937 (OMIM: 604978) cleavage and polyadenylation (227 aa) initn: 1542 init1: 1542 opt: 1542 Z-score: 1985.4 bits: 374.6 E(85289): 7.5e-104 Smith-Waterman score: 1542; 99.1% identity (99.6% similar) in 227 aa overlap (1-227:1-227) 10 20 30 40 50 60 pF1KE0 MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MSVVPPNRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELDPGEDEVEG :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: NP_008 AARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 LKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ 130 140 150 160 170 180 190 200 210 220 pF1KE0 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQPLSRFNFIYN ::::::::::::::::::::::::::::::::::::: ::::::::: NP_008 EKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN 190 200 210 220 227 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:44:29 2016 done: Mon Nov 7 03:44:30 2016 Total Scan time: 6.600 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]