Result of FASTA (omim) for pFN21AB7803
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7803, 503 aa
  1>>>pF1KB7803 503 - 503 aa - 503 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9856+/-0.0004; mu= 16.0883+/- 0.025
 mean_var=96.1045+/-19.452, 0's: 0 Z-trim(113.4): 50  B-trim: 0 in 0/53
 Lambda= 0.130829
 statistics sampled from 22668 (22717) to 22668 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.266), width:  16
 Scan time:  9.890

The best scores are:                                      opt bits E(85289)
NP_001035199 (OMIM: 600879) nuclear respiratory fa ( 503) 3199 614.4 2.4e-175
NP_005002 (OMIM: 600879) nuclear respiratory facto ( 503) 3199 614.4 2.4e-175
NP_001280092 (OMIM: 600879) nuclear respiratory fa ( 522) 2898 557.6 3.1e-158
NP_001280093 (OMIM: 600879) nuclear respiratory fa ( 342) 2171 420.3 4.5e-117


>>NP_001035199 (OMIM: 600879) nuclear respiratory factor  (503 aa)
 initn: 3199 init1: 3199 opt: 3199  Z-score: 3269.1  bits: 614.4 E(85289): 2.4e-175
Smith-Waterman score: 3199; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)

               10        20        30        40        50        60
pF1KB7 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
              430       440       450       460       470       480

              490       500   
pF1KB7 TTRISDSAVTMDGQAVEVVTLEQ
       :::::::::::::::::::::::
NP_001 TTRISDSAVTMDGQAVEVVTLEQ
              490       500   

>>NP_005002 (OMIM: 600879) nuclear respiratory factor 1   (503 aa)
 initn: 3199 init1: 3199 opt: 3199  Z-score: 3269.1  bits: 614.4 E(85289): 2.4e-175
Smith-Waterman score: 3199; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)

               10        20        30        40        50        60
pF1KB7 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
              430       440       450       460       470       480

              490       500   
pF1KB7 TTRISDSAVTMDGQAVEVVTLEQ
       :::::::::::::::::::::::
NP_005 TTRISDSAVTMDGQAVEVVTLEQ
              490       500   

>>NP_001280092 (OMIM: 600879) nuclear respiratory factor  (522 aa)
 initn: 2898 init1: 2898 opt: 2898  Z-score: 2961.8  bits: 557.6 E(85289): 3.1e-158
Smith-Waterman score: 3151; 96.4% identity (96.4% similar) in 522 aa overlap (1-503:1-522)

               10        20        30        40        50        60
pF1KB7 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
              370       380       390       400       410       420

              430       440       450                          460 
pF1KB7 ATLQGGGQIVLSGETAAAVGALTGVQDANGL-------------------VQIPVSMYQT
       :::::::::::::::::::::::::::::::                   ::::::::::
NP_001 ATLQGGGQIVLSGETAAAVGALTGVQDANGLFMADRAGRKWILTDKATGLVQIPVSMYQT
              430       440       450       460       470       480

             470       480       490       500   
pF1KB7 VVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 VVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ
              490       500       510       520  

>>NP_001280093 (OMIM: 600879) nuclear respiratory factor  (342 aa)
 initn: 2171 init1: 2171 opt: 2171  Z-score: 2222.8  bits: 420.3 E(85289): 4.5e-117
Smith-Waterman score: 2171; 100.0% identity (100.0% similar) in 342 aa overlap (162-503:1-342)

             140       150       160       170       180       190 
pF1KB7 VLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTID
                                     ::::::::::::::::::::::::::::::
NP_001                               MILEDLESALAEHAPAPQEVNSELPPLTID
                                             10        20        30

             200       210       220       230       240       250 
pF1KB7 GIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEE
               40        50        60        70        80        90

             260       270       280       290       300       310 
pF1KB7 QKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQTVVQTFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQTVVQTFS
              100       110       120       130       140       150

             320       330       340       350       360       370 
pF1KB7 NPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQ
              160       170       180       190       200       210

             380       390       400       410       420       430 
pF1KB7 TTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVL
              220       230       240       250       260       270

             440       450       460       470       480       490 
pF1KB7 SGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVTM
              280       290       300       310       320       330

             500   
pF1KB7 DGQAVEVVTLEQ
       ::::::::::::
NP_001 DGQAVEVVTLEQ
              340  




503 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:22:59 2016 done: Fri Nov  4 22:23:01 2016
 Total Scan time:  9.890 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com