hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20090426/iprscan-20090426-07235711/chunk_1/iprscan-20090426-07235711.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KE0169 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00054 97.4 1.7e-24 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00054 1/3 64 92 .. 1 29 [] 29.2 0.00056 SM00054 2/3 100 128 .. 1 29 [] 39.0 6.5e-07 SM00054 3/3 148 176 .. 1 29 [] 29.2 0.00057 Alignments of top-scoring domains: SM00054: domain 1 of 3, from 64 to 92: score 29.2, E = 0.00056 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* + +Fr fD++gdG+Idf Ef+ +l+ pF1KE0169 64 FAEHVFRTFDANGDGTIDFREFIIALSVT 92 SM00054: domain 2 of 3, from 100 to 128: score 39.0, E = 6.5e-07 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* +lk+aF+++D Dg+G+I++ E++++++++ pF1KE0169 100 KLKWAFSMYDLDGNGYISKAEMLEIVQAI 128 SM00054: domain 3 of 3, from 148 to 176: score 29.2, E = 0.00057 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* +++Fr +D+++dGk++ eEf+++ ks pF1KE0169 148 RTEKIFRQMDTNRDGKLSMEEFIRGAKSD 176 //