hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20090426/iprscan-20090426-07235711/chunk_1/iprscan-20090426-07235711.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KE0169 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00036.22.ls EF hand 94.6 2.7e-25 3 PF00036.22.fs EF hand 92.1 1.5e-24 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00036.22.fs 2/4 64 92 .. 1 29 [] 28.2 1.2e-06 PF00036.22.ls 1/3 64 92 .. 1 29 [] 30.2 6.6e-06 PF00036.22.fs 3/4 100 128 .. 1 29 [] 32.2 1e-07 PF00036.22.ls 2/3 100 128 .. 1 29 [] 34.2 4.3e-07 PF00036.22.fs 4/4 148 176 .. 1 29 [] 28.3 1.2e-06 PF00036.22.ls 3/3 148 176 .. 1 29 [] 30.3 6.4e-06 Alignments of top-scoring domains: PF00036.22.fs: domain 2 of 4, from 64 to 92: score 28.2, E = 1.2e-06 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ +F+ fD++gDG+I+f Ef+ al+ + pF1KE0169 64 FAEHVFRTFDANGDGTIDFREFIIALSVT 92 PF00036.22.ls: domain 1 of 3, from 64 to 92: score 30.2, E = 6.6e-06 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ +F+ fD++gDG+I+f Ef+ al+ + pF1KE0169 64 FAEHVFRTFDANGDGTIDFREFIIALSVT 92 PF00036.22.fs: domain 3 of 4, from 100 to 128: score 32.2, E = 1e-07 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* +lk aF+++D Dg+G+Is+ E++++++++ pF1KE0169 100 KLKWAFSMYDLDGNGYISKAEMLEIVQAI 128 PF00036.22.ls: domain 2 of 3, from 100 to 128: score 34.2, E = 4.3e-07 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* +lk aF+++D Dg+G+Is+ E++++++++ pF1KE0169 100 KLKWAFSMYDLDGNGYISKAEMLEIVQAI 128 PF00036.22.fs: domain 4 of 4, from 148 to 176: score 28.3, E = 1.2e-06 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* + +++F+++D+++DGk+s eEf+++ k+ pF1KE0169 148 RTEKIFRQMDTNRDGKLSMEEFIRGAKSD 176 PF00036.22.ls: domain 3 of 3, from 148 to 176: score 30.3, E = 6.4e-06 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* + +++F+++D+++DGk+s eEf+++ k+ pF1KE0169 148 RTEKIFRQMDTNRDGKLSMEEFIRGAKSD 176 //