Result of FASTA (omim) for
pFN21AB7905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7905, 124 aa
1>>>pF1KB7905 124 - 124 aa - 124 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9232+/-0.000286; mu= 13.0415+/- 0.018
mean_var=62.4071+/-11.836, 0's: 0 Z-trim(118.5): 17 B-trim: 73 in 1/50
Lambda= 0.162352
statistics sampled from 31486 (31503) to 31486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.369), width: 16
Scan time: 4.500
The best scores are: opt bits E(85289)
NP_005636 (OMIM: 600774) transcription initiation ( 124) 816 198.7 2e-51
XP_016866861 (OMIM: 602947) PREDICTED: transcripti ( 317) 163 46.0 4.7e-05
NP_003590 (OMIM: 602947) transcription initiation ( 317) 163 46.0 4.7e-05
XP_016866860 (OMIM: 602947) PREDICTED: transcripti ( 317) 163 46.0 4.7e-05
XP_011513254 (OMIM: 602947) PREDICTED: transcripti ( 319) 163 46.0 4.7e-05
XP_011513252 (OMIM: 602947) PREDICTED: transcripti ( 319) 163 46.0 4.7e-05
XP_011513256 (OMIM: 602947) PREDICTED: transcripti ( 319) 163 46.0 4.7e-05
XP_011513255 (OMIM: 602947) PREDICTED: transcripti ( 319) 163 46.0 4.7e-05
XP_011513253 (OMIM: 602947) PREDICTED: transcripti ( 319) 163 46.0 4.7e-05
XP_016866862 (OMIM: 602947) PREDICTED: transcripti ( 296) 130 38.3 0.0095
>>NP_005636 (OMIM: 600774) transcription initiation fact (124 aa)
initn: 816 init1: 816 opt: 816 Z-score: 1044.2 bits: 198.7 E(85289): 2e-51
Smith-Waterman score: 816; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124)
10 20 30 40 50 60
pF1KB7 MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEA
70 80 90 100 110 120
pF1KB7 NYGS
::::
NP_005 NYGS
>>XP_016866861 (OMIM: 602947) PREDICTED: transcription i (317 aa)
initn: 162 init1: 95 opt: 163 Z-score: 211.7 bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)
10 20 30 40 50 60
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
:. ::. :::..:: . : :.. ..::.:
XP_016 MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
10 20 30 40 50
70 80 90 100 110
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
. .. ..: .. : .:: . ::..::.::: .:. :. . . . .. :..:
XP_016 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
60 70 80 90 100 110
120
pF1KB7 EANYGS
:
XP_016 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
120 130 140 150 160 170
>>NP_003590 (OMIM: 602947) transcription initiation prot (317 aa)
initn: 162 init1: 95 opt: 163 Z-score: 211.7 bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)
10 20 30 40 50 60
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
:. ::. :::..:: . : :.. ..::.:
NP_003 MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
10 20 30 40 50
70 80 90 100 110
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
. .. ..: .. : .:: . ::..::.::: .:. :. . . . .. :..:
NP_003 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
60 70 80 90 100 110
120
pF1KB7 EANYGS
:
NP_003 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
120 130 140 150 160 170
>>XP_016866860 (OMIM: 602947) PREDICTED: transcription i (317 aa)
initn: 162 init1: 95 opt: 163 Z-score: 211.7 bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)
10 20 30 40 50 60
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
:. ::. :::..:: . : :.. ..::.:
XP_016 MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
10 20 30 40 50
70 80 90 100 110
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
. .. ..: .. : .:: . ::..::.::: .:. :. . . . .. :..:
XP_016 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
60 70 80 90 100 110
120
pF1KB7 EANYGS
:
XP_016 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
120 130 140 150 160 170
>>XP_011513254 (OMIM: 602947) PREDICTED: transcription i (319 aa)
initn: 162 init1: 95 opt: 163 Z-score: 211.7 bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)
10 20 30 40 50 60
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
:. ::. :::..:: . : :.. ..::.:
XP_011 MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
10 20 30 40 50
70 80 90 100 110
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
. .. ..: .. : .:: . ::..::.::: .:. :. . . . .. :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
60 70 80 90 100 110
120
pF1KB7 EANYGS
:
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
120 130 140 150 160 170
>>XP_011513252 (OMIM: 602947) PREDICTED: transcription i (319 aa)
initn: 162 init1: 95 opt: 163 Z-score: 211.7 bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)
10 20 30 40 50 60
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
:. ::. :::..:: . : :.. ..::.:
XP_011 MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
10 20 30 40 50
70 80 90 100 110
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
. .. ..: .. : .:: . ::..::.::: .:. :. . . . .. :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
60 70 80 90 100 110
120
pF1KB7 EANYGS
:
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
120 130 140 150 160 170
>>XP_011513256 (OMIM: 602947) PREDICTED: transcription i (319 aa)
initn: 162 init1: 95 opt: 163 Z-score: 211.7 bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)
10 20 30 40 50 60
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
:. ::. :::..:: . : :.. ..::.:
XP_011 MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
10 20 30 40 50
70 80 90 100 110
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
. .. ..: .. : .:: . ::..::.::: .:. :. . . . .. :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
60 70 80 90 100 110
120
pF1KB7 EANYGS
:
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
120 130 140 150 160 170
>>XP_011513255 (OMIM: 602947) PREDICTED: transcription i (319 aa)
initn: 162 init1: 95 opt: 163 Z-score: 211.7 bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)
10 20 30 40 50 60
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
:. ::. :::..:: . : :.. ..::.:
XP_011 MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
10 20 30 40 50
70 80 90 100 110
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
. .. ..: .. : .:: . ::..::.::: .:. :. . . . .. :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
60 70 80 90 100 110
120
pF1KB7 EANYGS
:
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
120 130 140 150 160 170
>>XP_011513253 (OMIM: 602947) PREDICTED: transcription i (319 aa)
initn: 162 init1: 95 opt: 163 Z-score: 211.7 bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)
10 20 30 40 50 60
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
:. ::. :::..:: . : :.. ..::.:
XP_011 MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
10 20 30 40 50
70 80 90 100 110
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
. .. ..: .. : .:: . ::..::.::: .:. :. . . . .. :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
60 70 80 90 100 110
120
pF1KB7 EANYGS
:
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
120 130 140 150 160 170
>>XP_016866862 (OMIM: 602947) PREDICTED: transcription i (296 aa)
initn: 115 init1: 81 opt: 130 Z-score: 170.4 bits: 38.3 E(85289): 0.0095
Smith-Waterman score: 130; 29.3% identity (65.9% similar) in 82 aa overlap (41-119:14-95)
20 30 40 50 60 70
pF1KB7 EEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTH
:..:: . : :.. ..::.: . .. .
XP_016 MVVFGTTFFNFDRYSLGDARRPLHETAVLVEDVVHTQLINLLQ
10 20 30 40
80 90 100 110 120
pF1KB7 KAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANYGS
.: .. : .:: . ::..::.::: .:. :. . . . .. :..::
XP_016 QAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDKL
50 60 70 80 90 100
XP_016 SGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTRIMDSAQYAE
110 120 130 140 150 160
124 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:47:57 2016 done: Sat Nov 5 19:47:57 2016
Total Scan time: 4.500 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]