Result of FASTA (omim) for pFN21AB6721
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6721, 91 aa
  1>>>pF1KB6721 91 - 91 aa - 91 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2273+/-0.000294; mu= 13.7361+/- 0.018
 mean_var=47.3033+/- 9.733, 0's: 0 Z-trim(116.9): 34  B-trim: 2709 in 2/48
 Lambda= 0.186478
 statistics sampled from 28444 (28478) to 28444 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.334), width:  16
 Scan time:  3.670

The best scores are:                                      opt bits E(85289)
NP_036454 (OMIM: 607285) U6 snRNA-associated Sm-li (  91)  586 164.3 2.5e-41
NP_001132971 (OMIM: 607285) U6 snRNA-associated Sm (  62)  400 114.1 2.2e-26
NP_001124182 (OMIM: 607285) U6 snRNA-associated Sm (  62)  400 114.1 2.2e-26
NP_055278 (OMIM: 607283) U6 snRNA-associated Sm-li ( 102)  137 43.5 6.4e-05
NP_003085 (OMIM: 128260,615059) small nuclear ribo (  92)  136 43.2 7.1e-05
NP_001315567 (OMIM: 128260,615059) small nuclear r (  79)  134 42.6 9.1e-05
NP_001291393 (OMIM: 128260,615059) small nuclear r (  84)  134 42.6 9.6e-05
NP_001315566 (OMIM: 128260,615059) small nuclear r (  90)  134 42.7  0.0001
NP_003087 (OMIM: 603542) small nuclear ribonucleop (  76)  110 36.1  0.0078


>>NP_036454 (OMIM: 607285) U6 snRNA-associated Sm-like p  (91 aa)
 initn: 586 init1: 586 opt: 586  Z-score: 862.9  bits: 164.3 E(85289): 2.5e-41
Smith-Waterman score: 586; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
               10        20        30        40        50        60

               70        80        90 
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
       :::::::::::::::::::::::::::::::
NP_036 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
               70        80        90 

>>NP_001132971 (OMIM: 607285) U6 snRNA-associated Sm-lik  (62 aa)
 initn: 400 init1: 400 opt: 400  Z-score: 594.8  bits: 114.1 E(85289): 2.2e-26
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 62 aa overlap (30-91:1-62)

               10        20        30        40        50        60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
                                    :::::::::::::::::::::::::::::::
NP_001                              MKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
                                            10        20        30 

               70        80        90 
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
       :::::::::::::::::::::::::::::::
NP_001 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
              40        50        60  

>>NP_001124182 (OMIM: 607285) U6 snRNA-associated Sm-lik  (62 aa)
 initn: 400 init1: 400 opt: 400  Z-score: 594.8  bits: 114.1 E(85289): 2.2e-26
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 62 aa overlap (30-91:1-62)

               10        20        30        40        50        60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
                                    :::::::::::::::::::::::::::::::
NP_001                              MKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
                                            10        20        30 

               70        80        90 
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
       :::::::::::::::::::::::::::::::
NP_001 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
              40        50        60  

>>NP_055278 (OMIM: 607283) U6 snRNA-associated Sm-like p  (102 aa)
 initn: 125 init1: 125 opt: 137  Z-score: 209.3  bits: 43.5 E(85289): 6.4e-05
Smith-Waterman score: 137; 34.9% identity (57.8% similar) in 83 aa overlap (6-88:10-91)

                   10        20        30        40        50      
pF1KB6     MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE
                :::  .  ::.:.   .  ::.. :..:.:. : : ..:. .::.: :: :
NP_055 MADDVDQQQTTNTVEE-PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE
               10         20        30        40        50         

         60        70        80        90         
pF1KB6 FEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV        
          : :  . :  .    .  :: ::   :.:           
NP_055 TVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
      60        70        80        90       100  

>>NP_003085 (OMIM: 128260,615059) small nuclear ribonucl  (92 aa)
 initn: 138 init1:  66 opt: 136  Z-score: 208.5  bits: 43.2 E(85289): 7.1e-05
Smith-Waterman score: 136; 32.9% identity (74.0% similar) in 73 aa overlap (14-82:17-87)

                  10        20          30          40        50   
pF1KB6    MAANATTNPSQLLPLELVDKCIG--SRIHIVM--KSDKEIVGTLLGFDDFVNMVLED
                       :..:. . .   :::.. .  . . .: : ..:::...:.::.:
NP_003 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD
               10        20        30        40        50        60

            60        70        80        90 
pF1KB6 VTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
       . :..   ..:.  .: .:.:.:.:::.:         
NP_003 AEEIHSKTKSRK--QLGRIMLKGDNITLLQSVSN    
               70          80        90      

>>NP_001315567 (OMIM: 128260,615059) small nuclear ribon  (79 aa)
 initn: 128 init1:  66 opt: 134  Z-score: 206.6  bits: 42.6 E(85289): 9.1e-05
Smith-Waterman score: 134; 36.1% identity (77.0% similar) in 61 aa overlap (24-82:16-74)

               10        20        30          40        50        
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE
                              :::.. .  . . .: : ..:::...:.::.:. :..
NP_001         MQEWTRQKEGRELQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH
                       10        20        30        40        50  

       60        70        80        90 
pF1KB6 ITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
          ..:.  .: .:.:.:.:::.:         
NP_001 SKTKSRK--QLGRIMLKGDNITLLQSVSN    
               60        70             

>>NP_001291393 (OMIM: 128260,615059) small nuclear ribon  (84 aa)
 initn: 138 init1:  66 opt: 134  Z-score: 206.2  bits: 42.6 E(85289): 9.6e-05
Smith-Waterman score: 134; 36.1% identity (77.0% similar) in 61 aa overlap (24-82:21-79)

               10        20        30          40        50        
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE
                              :::.. .  . . .: : ..:::...:.::.:. :..
NP_001    MSGLGATVVQNLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH
                  10        20        30        40        50       

       60        70        80        90 
pF1KB6 ITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
          ..:.  .: .:.:.:.:::.:         
NP_001 SKTKSRK--QLGRIMLKGDNITLLQSVSN    
        60          70        80        

>>NP_001315566 (OMIM: 128260,615059) small nuclear ribon  (90 aa)
 initn: 138 init1:  66 opt: 134  Z-score: 205.8  bits: 42.7 E(85289): 0.0001
Smith-Waterman score: 134; 36.1% identity (77.0% similar) in 61 aa overlap (24-82:27-85)

                  10        20        30          40        50     
pF1KB6    MAANATTNPSQLLPLELVDKCIGSRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVT
                                 :::.. .  . . .: : ..:::...:.::.:. 
NP_001 MDAAKGGKRTSATVVQNLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAE
               10        20        30        40        50        60

          60        70        80        90 
pF1KB6 EFEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
       :..   ..:.  .: .:.:.:.:::.:         
NP_001 EIHSKTKSRK--QLGRIMLKGDNITLLQSVSN    
               70          80        90    

>>NP_003087 (OMIM: 603542) small nuclear ribonucleoprote  (76 aa)
 initn:  84 init1:  59 opt: 110  Z-score: 171.9  bits: 36.1 E(85289): 0.0078
Smith-Waterman score: 110; 27.4% identity (68.5% similar) in 73 aa overlap (10-82:2-70)

               10        20        30        40        50        60
pF1KB6 MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
                :.  : ::  : . ... . ... ... : : ::: :.:.:... .:  ..
NP_003         MSKAHPPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--MA
                        10        20        30        40           

               70        80        90 
pF1KB6 PEGRRITKLDQILLNGNNITMLVPGGEGPEV
         :.. ... .... ::.: ::         
NP_003 TSGQQ-NNIGMVVIRGNSIIMLEALERV   
      50         60        70         




91 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:34:11 2016 done: Fri Nov  4 23:34:12 2016
 Total Scan time:  3.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com