FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6156, 132 aa 1>>>pF1KE6156 132 - 132 aa - 132 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3246+/-0.000717; mu= 10.2026+/- 0.043 mean_var=56.5289+/-11.199, 0's: 0 Z-trim(108.4): 18 B-trim: 60 in 2/51 Lambda= 0.170584 statistics sampled from 10163 (10181) to 10163 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.313), width: 16 Scan time: 1.670 The best scores are: opt bits E(32554) CCDS13950.1 LGALS2 gene_id:3957|Hs108|chr22 ( 132) 892 227.2 2.3e-60 CCDS13954.1 LGALS1 gene_id:3956|Hs108|chr22 ( 135) 391 103.9 3e-23 CCDS41956.1 LGALS3 gene_id:3958|Hs108|chr14 ( 250) 236 65.9 1.6e-11 >>CCDS13950.1 LGALS2 gene_id:3957|Hs108|chr22 (132 aa) initn: 892 init1: 892 opt: 892 Z-score: 1197.3 bits: 227.2 E(32554): 2.3e-60 Smith-Waterman score: 892; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KE6 MTGELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLNLHFNPRFSESTIVCNSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MTGELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLNLHFNPRFSESTIVCNSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNRLGHSHLSYLSVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 DGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNRLGHSHLSYLSVR 70 80 90 100 110 120 130 pF1KE6 GGFNMSSFKLKE :::::::::::: CCDS13 GGFNMSSFKLKE 130 >>CCDS13954.1 LGALS1 gene_id:3956|Hs108|chr22 (135 aa) initn: 236 init1: 236 opt: 391 Z-score: 530.8 bits: 103.9 E(32554): 3e-23 Smith-Waterman score: 391; 44.2% identity (73.6% similar) in 129 aa overlap (1-125:1-129) 10 20 30 40 50 pF1KE6 MTGELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLNLHFNPRFSE----STIV :. : ..:...::: :.. : .: . .::.:::. ...: :::::::. .::: CCDS13 MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 CNSLDGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNRLGHSHLSY ::: ::. :: :::: . :.::: .. .::.. .. ::::::.:. :::::. ..: CCDS13 CNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINY 70 80 90 100 110 120 120 130 pF1KE6 LSVRGGFNMSSFKLKE ... : :.. CCDS13 MAADGDFKIKCVAFD 130 >>CCDS41956.1 LGALS3 gene_id:3958|Hs108|chr14 (250 aa) initn: 192 init1: 146 opt: 236 Z-score: 320.3 bits: 65.9 E(32554): 1.6e-11 Smith-Waterman score: 236; 32.2% identity (68.6% similar) in 118 aa overlap (14-127:128-244) 10 20 30 40 pF1KE6 MTGELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLN : . : :.. ... ..... .:.: . CCDS41 TGAYPATGPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGND-VA 100 110 120 130 140 150 50 60 70 80 90 100 pF1KE6 LHFNPRFSEST---IVCNSLDGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDG .::::::.:.. ::::. .:::.:.:.. . : :. :. : : :.::: . :. CCDS41 FHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDA 160 170 180 190 200 210 110 120 130 pF1KE6 HELTFPNRLGH-SHLSYLSVRGGFNMSSFKLKE : : . .:. . ...: :.. : ....: CCDS41 HLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI 220 230 240 250 132 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:56:22 2016 done: Tue Nov 8 09:56:23 2016 Total Scan time: 1.670 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]