hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/smart.HMMs.bin
Sequence file: /tmp/20080627/iprscan-20080627-00061727/chunk_1/iprscan-20080627-00061727.nocrc
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Query sequence: pF1KB7618
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00355 84.6 1.2e-20 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00355 1/3 279 303 .. 1 23 [] 24.7 0.013
SM00355 2/3 309 333 .. 1 23 [] 32.1 7.5e-05
SM00355 3/3 339 361 .. 1 23 [] 27.8 0.0015
Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 279 to 303: score 24.7, E = 0.013
*->ykCpi.gCgksfssk.aLkrHmrvH<-*
++C ++gCgks++ ++Lk H+r+H
pF1KB7618 279 HTCAHpGCGKSYTKSsHLKAHLRTH 303
SM00355: domain 2 of 3, from 309 to 333: score 32.1, E = 7.5e-05
*->ykCpi.gCgksfssk.aLkrHmrvH<-*
y C+++gCg++f + ++L+rH+r+H
pF1KB7618 309 YACTWeGCGWRFARSdELTRHYRKH 333
SM00355: domain 3 of 3, from 339 to 361: score 27.8, E = 0.0015
*->ykCpigCgksfssk.aLkrHmrvH<-*
++C++ C++ fs+ ++L Hm++H
pF1KB7618 339 FRCQL-CPRAFSRSdHLALHMKRH 361
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