Result of FASTA (ccds) for
pFN21AB8996
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8996, 407 aa
1>>>pF1KB8996 407 - 407 aa - 407 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6919+/-0.000857; mu= 5.3431+/- 0.052
mean_var=244.1589+/-49.616, 0's: 0 Z-trim(116.2): 32 B-trim: 430 in 1/53
Lambda= 0.082080
statistics sampled from 16746 (16778) to 16746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.515), width: 16
Scan time: 2.930
The best scores are: opt bits E(32554)
CCDS2132.1 INHBB gene_id:3625|Hs108|chr2 ( 407) 2859 350.9 1.3e-96
CCDS5464.1 INHBA gene_id:3624|Hs108|chr7 ( 426) 700 95.2 1.2e-19
CCDS8938.1 INHBC gene_id:3626|Hs108|chr12 ( 352) 623 86.0 5.9e-17
CCDS8939.1 INHBE gene_id:83729|Hs108|chr12 ( 350) 552 77.6 2e-14
>>CCDS2132.1 INHBB gene_id:3625|Hs108|chr2 (407 aa)
initn: 2859 init1: 2859 opt: 2859 Z-score: 1848.0 bits: 350.9 E(32554): 1.3e-96
Smith-Waterman score: 2859; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)
10 20 30 40 50 60
pF1KB8 MDGLPGRALGAACLLLLAAGWLGPEAWGSPTPPPTPAAPPPPPPPGSPGGSQDTCTSCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MDGLPGRALGAACLLLLAAGWLGPEAWGSPTPPPTPAAPPPPPPPGSPGGSQDTCTSCGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FRRPEELGRVDGDFLEAVKRHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 FRRPEELGRVDGDFLEAVKRHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VEIPHLDGHASPGADGQERVSEIISFAETDGLASSRVRLYFFISNEGNQNLFVVQASLWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 VEIPHLDGHASPGADGQERVSEIISFAETDGLASSRVRLYFFISNEGNQNLFVVQASLWL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 YLKLLPYVLEKGSRRKVRVKVYFQEQGHGDRWNMVEKRVDLKRSGWHTFPLTEAIQALFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 YLKLLPYVLEKGSRRKVRVKVYFQEQGHGDRWNMVEKRVDLKRSGWHTFPLTEAIQALFE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RGERRLNLDVQCDSCQELAVVPVFVDPGEESHRPFVVVQARLGDSRHRIRKRGLECDGRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 RGERRLNLDVQCDSCQELAVVPVFVDPGEESHRPFVVVQARLGDSRHRIRKRGLECDGRT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 NLCCRQQFFIDFRLIGWNDWIIAPTGYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 NLCCRQQFFIDFRLIGWNDWIIAPTGYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRM
310 320 330 340 350 360
370 380 390 400
pF1KB8 RGLNPGTVNSCCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGCA
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 RGLNPGTVNSCCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGCA
370 380 390 400
>>CCDS5464.1 INHBA gene_id:3624|Hs108|chr7 (426 aa)
initn: 1151 init1: 437 opt: 700 Z-score: 466.1 bits: 95.2 E(32554): 1.2e-19
Smith-Waterman score: 1131; 43.3% identity (69.7% similar) in 413 aa overlap (43-407:22-426)
20 30 40 50 60 70
pF1KB8 CLLLLAAGWLGPEAWGSPTPPPTPAAPPPPPPPGSPGGSQ-DTCTSCGGFRRPEELGRVD
: ::: : : : ::. :... .
CCDS54 MPLLWLRGFLLASCWIIVRSSPTPGSEGHSAAPDCPSCALAALPKDVPNSQ
10 20 30 40 50
80 90 100 110 120 130
pF1KB8 GDFLEAVKRHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGRVEIPHLDGHAS
...::::.:::. :... ::..:. :::::...:.::::.::: :.: ::: :. .
CCDS54 PEMVEAVKKHILNMLHLKKRPDVTQPVPKAALLNAIRKLHVGKVGENGYVEIEDDIGRRA
60 70 80 90 100 110
140 150 160 170 180 190
pF1KB8 PGADGQERVSEIISFAETDGLASSRVRLYFFISNEGNQNLFVVQASLWLYLKLLPYVLEK
. .:..::::.:::. ...: :.: ::.::.. : .: .::.::. : :
CCDS54 EMNELMEQTSEIITFAES---GTARKTLHFEISKEGSDLSVVERAEVWLFLKV-P----K
120 130 140 150 160
200 210 220 230
pF1KB8 GSRRKVRVKVY-FQEQGH-----------------GDRWNMV--EKRVDLKRSGWHTFPL
..: ...: . ::.: : :.: ... :: :: ..: ::.::.
CCDS54 ANRTRTKVTIRLFQQQKHPQGSLDTGEEAEEVGLKGERSELLLSEKVVDARKSTWHVFPV
170 180 190 200 210 220
240 250 260
pF1KB8 TEAIQALFERGERRLNLDVQCDSCQELAVVPVFV-------DPGE---------------
. .:: :...:. :.. . :..::: .. :.. . ::
CCDS54 SSSIQRLLDQGKSSLDVRIACEQCQESGASLVLLGKKKKKEEEGEGKKKGGGEGGAGADE
230 240 250 260 270 280
270 280 290 300 310 320
pF1KB8 ---ESHRPFVVVQARLG-DSRHRIRKRGLECDGRTNLCCRQQFFIDFRLIGWNDWIIAPT
.:::::...::: . : :: :.:::::::..:.::..:::..:. ::::::::::.
CCDS54 EKEQSHRPFLMLQARQSEDHPHRRRRRGLECDGKVNICCKKQFFVSFKDIGWNDWIIAPS
290 300 310 320 330 340
330 340 350 360 370 380
pF1KB8 GYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRMRGLNP-GTVNSCCIPTKLSTMSMLY
::..::::: ::...::. ::. :::..:.:.::::: .: ....:::.:::: :::::
CCDS54 GYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLY
350 360 370 380 390 400
390 400
pF1KB8 FDDEYNIVKRDVPNMIVEECGCA
.:: ::.:.:. :::::::::.
CCDS54 YDDGQNIIKKDIQNMIVEECGCS
410 420
>>CCDS8938.1 INHBC gene_id:3626|Hs108|chr12 (352 aa)
initn: 709 init1: 338 opt: 623 Z-score: 417.8 bits: 86.0 E(32554): 5.9e-17
Smith-Waterman score: 776; 38.3% identity (64.6% similar) in 373 aa overlap (42-407:14-352)
20 30 40 50 60
pF1KB8 ACLLLLAAGWLGPEAWGSPTPPPTPAAPPPPPPPGSP-GGSQDTCTSCGGFRRPE-ELGR
: ..: .:.: : .::: : ::
CCDS89 MTSSLLLAFLLLAPTTVATPRAGGQ--CPACGG---PTLELES
10 20 30
70 80 90 100 110 120
pF1KB8 VDGDFLEAVKRHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGRVEIPHLDGH
.:. .:: ::..:.. ::.... : .::. :::..::. .:.
CCDS89 QRELLLDLAKRSILDKLHLTQRPTLNRPVSRAALRTALQHLHG----------VPQ----
40 50 60 70 80
130 140 150 160 170 180
pF1KB8 ASPGADGQERVSEIISFAETDGLAS-SRVRLYF-FISNEGNQNLFVVQASLWLYLKLLPY
.. :..:. :::::::: ::.. ...:: : : :.. . : :::: ....: :
CCDS89 GALLEDNREQECEIISFAET-GLSTINQTRLDFHFSSDRTAGDREVQQASLMFFVQL-PS
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB8 VLEKGSRRKVRVKVYFQEQGHGDRWNMVEKRV-DLKRSGWHTFPLTEAIQALFERGERRL
. :::: : :. ... . . .. :::: .:: :: .:. :
CCDS89 --NTTWTLKVRVLVL---GPHNTNLTLATQYLLEVDASGWHQLPLGPEAQAACSQGHLTL
150 160 170 180 190
250 260 270 280 290 300
pF1KB8 NLDVQCDSCQELAVVPVFVDPGEESHRPFVVVQARLGDSRHRIRKRGLECDGRTNLCCRQ
.: .. . : ... : .:::::....:.: ..:.:..::..:.: . .::::
CCDS89 ELVLEGQVAQSSVIL------GGAAHRPFVAARVRVG-GKHQIHRRGIDCQGGSRMCCRQ
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB8 QFFIDFRLIGWNDWIIAPTGYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRMRGLNPG
.::.::: :::.:::: : :: :.: :.:: ..::.:: :.::::::.: . . :
CCDS89 EFFVDFREIGWHDWIIQPEGYAMNFCIGQCPLHIAGMPGIAASFHTAVLNLLKA-NTAAG
260 270 280 290 300
370 380 390 400
pF1KB8 TVN--SCCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGCA
:.. :::.:: .:.::.: . :::: :.:.:.:: :::.
CCDS89 TTGGGSCCVPTARRPLSLLYYDRDSNIVKTDIPDMVVEACGCS
310 320 330 340 350
>>CCDS8939.1 INHBE gene_id:83729|Hs108|chr12 (350 aa)
initn: 627 init1: 278 opt: 552 Z-score: 372.4 bits: 77.6 E(32554): 2e-14
Smith-Waterman score: 668; 36.2% identity (59.9% similar) in 367 aa overlap (50-407:21-350)
20 30 40 50 60 70
pF1KB8 GWLGPEAWGSPTPPPTPAAPPPPPPPGSPGGSQDTCTSCGGFRRPEELGRVDGDFLEAVK
:. ..: :::: . . :. :: .:
CCDS89 MRLPDVQLWLVLLWALVRAQGTGSVCPSCGGSKLAPQAERAL--VLELAK
10 20 30 40
80 90 100 110 120 130
pF1KB8 RHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGRVEIPHLDGHASPGADGQER
..::. :.. .:: ::: :.::.. :::.:. :.: .:: .:.:
CCDS89 QQILDGLHLTSRPRITHPPPQAALTRALRRLQPGSV---------------APG-NGEE-
50 60 70 80 90
140 150 160 170 180 190
pF1KB8 VSEIISFAE-TDGLASSRVRLYFFISNEGNQNLFVVQASLWLY-LKLLPYVLEKGSRRKV
.:::: ::. .. : : .:. ...:. .: :::. : :: .: :
CCDS89 ---VISFATVTDSTSAYSSLLTFHLSTPRSHHLY--HARLWLHVLPTLPGTL---CLRIF
100 110 120 130 140
200 210 220 230 240 250
pF1KB8 RVKVYFQEQGHGDRWNMVEKRVDLKRSGWHTFPLTEAIQALFERGERRLNLDVQCDSCQE
: ..:: .: ..:... ::::. : . .: :::. : .: : :.
CCDS89 RWGPRRRRQG--SRTLLAEHHIT--NLGWHTLTLPSS--GL--RGEKSGVLKLQLD-CRP
150 160 170 180 190
260 270 280 290 300 310
pF1KB8 L-AVVPVFVDP----GEESHR-PFVVVQARLGD-SRHRIRKRGLECDGRTNLCCRQQFFI
: . : .: .:. ::. .. : .. . : :.: :. : ::::.. ..
CCDS89 LEGNSTVTGQPRRLLDTAGHQQPFLELKIRANEPGAGRARRRTPTCEPATPLCCRRDHYV
200 210 220 230 240 250
320 330 340 350 360 370
pF1KB8 DFRLIGWNDWIIAPTGYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRMRGLNPGTVNS
::. .:: :::. : :: ::: :.:: .::: :: :.:::.:: . . . :... :
CCDS89 DFQELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVFSLLKANNPWPAST-S
260 270 280 290 300 310
380 390 400
pF1KB8 CCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGCA
::.:: .:.::.: . :.:: :::.:.:: :::.
CCDS89 CCVPTARRPLSLLYLDHNGNVVKTDVPDMVVEACGCS
320 330 340 350
407 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:52:21 2016 done: Sat Nov 5 00:52:22 2016
Total Scan time: 2.930 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]