Result of FASTA (ccds) for pFN21AB6389
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6389, 275 aa
  1>>>pF1KB6389 275 - 275 aa - 275 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1399+/-0.000827; mu= 15.9888+/- 0.050
 mean_var=67.3985+/-13.390, 0's: 0 Z-trim(107.0): 22  B-trim: 7 in 1/51
 Lambda= 0.156224
 statistics sampled from 9273 (9290) to 9273 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.285), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS11657.1 ICAM2 gene_id:3384|Hs108|chr17         ( 275) 1835 422.3 1.8e-118
CCDS12235.1 ICAM3 gene_id:3385|Hs108|chr19         ( 547)  419 103.4 3.7e-22
CCDS12233.1 ICAM5 gene_id:7087|Hs108|chr19         ( 924)  388 96.5 7.2e-20
CCDS12231.1 ICAM1 gene_id:3383|Hs108|chr19         ( 532)  366 91.4 1.4e-18
CCDS12232.1 ICAM4 gene_id:3386|Hs108|chr19         ( 271)  289 73.9 1.4e-13
CCDS82290.1 ICAM3 gene_id:3385|Hs108|chr19         ( 470)  288 73.8 2.6e-13
CCDS42500.1 ICAM4 gene_id:3386|Hs108|chr19         ( 237)  280 71.8 5.1e-13


>>CCDS11657.1 ICAM2 gene_id:3384|Hs108|chr17              (275 aa)
 initn: 1835 init1: 1835 opt: 1835  Z-score: 2240.3  bits: 422.3 E(32554): 1.8e-118
Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)

               10        20        30        40        50        60
pF1KB6 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT
              190       200       210       220       230       240

              250       260       270     
pF1KB6 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
       :::::::::::::::::::::::::::::::::::
CCDS11 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
              250       260       270     

>>CCDS12235.1 ICAM3 gene_id:3385|Hs108|chr19              (547 aa)
 initn: 449 init1: 302 opt: 419  Z-score: 511.2  bits: 103.4 E(32554): 3.7e-22
Smith-Waterman score: 419; 36.0% identity (63.1% similar) in 214 aa overlap (16-225:18-226)

                 10           20        30        40        50     
pF1KB6   MSSFGYRTLTVALFTLICC---PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQP
                        :.::   :: . . : ..:.:.. ..   ::: ::::: : . 
CCDS12 MATMVPSVLWPRACWTLLVCCLLTPGVQGQEFLLRVEPQNPVLSAGGSLFVNCSTDCPSS
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB6 EVGGLETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQV
       :  .:::::.: :.     :  . .::.. .. . :   :.:.: . .::..::. :..:
CCDS12 EKIALETSLSKELVASGMGWAAFNLSNVTGNSRILCSVYCNGSQITGSSNITVYRLPERV
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATF
        :.  :    ::..::..:.:    :  :::. :.: .: :  .    :.  : :.::: 
CCDS12 ELAPLPPWQPVGQNFTLRCQVEDGSPRTSLTVVLLRWEEELSRQ---PAVEEPAEVTATV
              130       140       150       160          170       

         180       190       200       210        220       230    
pF1KB6 NSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYE-PVSDSQMVIIVTVVSVL
          :.:.:    ::: . ::.. .: ..: . :::..:. .  ::.  ..:         
CCDS12 --LASRDDHGAPFSCRTELDMQPQGLGLFVNTSAPRQLRTFVLPVTPPRLVAPRFLEVET
         180       190       200       210       220       230     

          240       250       260       270                        
pF1KB6 LSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP                   
                                                                   
CCDS12 SWPVDCTLDGLFPASEAQVYLALGDQMLNATVMNHGDTLTATATATARADQEGAREIVCN
         240       250       260       270       280       290     

>>CCDS12233.1 ICAM5 gene_id:7087|Hs108|chr19              (924 aa)
 initn: 355 init1: 223 opt: 388  Z-score: 470.2  bits: 96.5 E(32554): 7.2e-20
Smith-Waterman score: 388; 35.8% identity (58.6% similar) in 215 aa overlap (9-222:19-230)

                         10        20        30        40        50
pF1KB6           MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCST
                         : ..:: :    . ... : . ..:.   ::  ::: .::::
CCDS12 MPGPSPGLRRALLGLWAALGLGLFGL---SAVSQEPFWADLQPRVAFVERGGSLWLNCST
               10        20           30        40        50       

               60        70         80        90       100         
pF1KB6 TCNQPEVGGLETSLDKILLDEQAQW-KHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVY
       .: .:: ::::::: .   ..  .:  . ::.    .:   : : :. .  .  . . ..
CCDS12 NCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTF
        60        70        80        90       100       110       

     110       120       130       140       150       160         
pF1KB6 QPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQ
       : : .: :   :    ::..::. :::: . :  :::: :.:: . :  ..:.   :  .
CCDS12 QRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRAR
       120       130       140       150       160       170       

     170       180       190       200       210       220         
pF1KB6 EATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVT
        :. : .  : :::   :::: : :::  .: ..:.. :::. :. .    :.       
CCDS12 GAVLTATVLARREDHGANFSCRAELDLRPHGLGLFENSSAPRELRTFSLSPDAPRLAAPR
       180       190       200       210       220       230       

     230       240       250       260       270                   
pF1KB6 VVSVLLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP              
                                                                   
CCDS12 LLEVGSERPVSCTLDGLFPASEARVYLALGDQNLSPDVTLEGDAFVATATATASAEQEGA
       240       250       260       270       280       290       

>>CCDS12231.1 ICAM1 gene_id:3383|Hs108|chr19              (532 aa)
 initn: 326 init1: 170 opt: 366  Z-score: 446.8  bits: 91.4 E(32554): 1.4e-18
Smith-Waterman score: 366; 35.0% identity (62.7% similar) in 220 aa overlap (9-225:13-222)

                   10        20        30        40        50      
pF1KB6     MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPE
                   : : : .:.  ::. .    . : :.:. .   ::. :.:::.:.::.
CCDS12 MAPSSPRPALPALLVLLGALFPGPGNAQ----TSVSPSKVILPRGGSVLVTCSTSCDQPK
               10        20            30        40        50      

         60         70        80        90       100       110     
pF1KB6 VGGLETSLDKI-LLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQV
       . :.:: : :  ::    . : : .::...:.  .:. .:   : . .. ..::  :..:
CCDS12 LLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERV
         60        70        80        90       100       110      

         120       130       140       150       160       170     
pF1KB6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATF
        :.  :.   :::..:..:.:    :  .::. :.::.. :. :    :.  : :.:.: 
CCDS12 ELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP---AVGEPAEVTTT-
        120       130       140       150       160          170   

         180        190       200       210        220       230   
pF1KB6 NSTADREDGH-RNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYE-PVSDSQMVIIVTVVSV
         .  :.: :  :::: . :::  .: ..:.. ::: .:. .  :..  :.:        
CCDS12 --VLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD
              180       190       200       210       220       230

           240       250       260       270                       
pF1KB6 LLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP                  
                                                                   
CCDS12 TQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTC
              240       250       260       270       280       290

>>CCDS12232.1 ICAM4 gene_id:3386|Hs108|chr19              (271 aa)
 initn: 196 init1:  95 opt: 289  Z-score: 357.3  bits: 73.9 E(32554): 1.4e-13
Smith-Waterman score: 289; 27.0% identity (62.2% similar) in 230 aa overlap (20-245:41-262)

                          10        20        30        40         
pF1KB6            MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCS
                                     :..    : :.. :. .::.:  :...:::
CCDS12 FFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCS
               20        30        40        50        60        70

      50        60        70        80         90       100        
pF1KB6 TTCNQPEVGGLETSLDKILLDEQAQWKHYLVSNI-SHDTVLQCHFTCSGKQESMNSNVSV
       ..: ::. ..:.: : .    .   :  : . .. . ... .:  ::.:: .  .: ...
CCDS12 NSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATSRITA
               80        90       100       110       120       130

      110       120       130       140       150       160        
pF1KB6 YQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP
       :.::..:::  .: ..  :...:..:.:  : :.  :.. : .:..... :.. . .   
CCDS12 YKPPHSVIL--EPPVLK-GRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESLERFTGLD
                140        150       160       170       180       

       170       180       190       200       210       220       
pF1KB6 -QEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVI-
         ..: :.. .:  .:  .   : : :.:    : . .. :::  : .    . . ..  
CCDS12 LANVTLTYEFAAGPRDFWQPVICHARLNL---DGLVVRNSSAPITLMLAWSPAPTALASG
       190       200       210          220       230       240    

         230       240       250       260       270     
pF1KB6 -IVTVVSVLLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
        :...:..::.  : .. ::                              
CCDS12 SIAALVGILLT--VGAAYLCKCLAMKSQA                     
          250         260       270                      

>>CCDS82290.1 ICAM3 gene_id:3385|Hs108|chr19              (470 aa)
 initn: 303 init1: 177 opt: 288  Z-score: 352.6  bits: 73.8 E(32554): 2.6e-13
Smith-Waterman score: 288; 34.2% identity (63.2% similar) in 152 aa overlap (75-225:3-149)

           50        60        70        80        90       100    
pF1KB6 EVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNS
                                     :  . .::.. .. . :   :.:.: . .:
CCDS82                             MGWAAFNLSNVTGNSRILCSVYCNGSQITGSS
                                           10        20        30  

          110       120       130       140       150       160    
pF1KB6 NVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA
       :..::. :..: :.  :    ::..::..:.:    :  :::. :.: .: :  .    :
CCDS82 NITVYRLPERVELAPLPPWQPVGQNFTLRCQVEDGSPRTSLTVVLLRWEEELSRQP---A
             40        50        60        70        80            

          170       180       190       200       210        220   
pF1KB6 APAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYE-PVSDSQ
       .  : :.:::    :.:.:    ::: . ::.. .: ..: . :::..:. .  ::.  .
CCDS82 VEEPAEVTATV--LASRDDHGAPFSCRTELDMQPQGLGLFVNTSAPRQLRTFVLPVTPPR
      90       100         110       120       130       140       

           230       240       250       260       270             
pF1KB6 MVIIVTVVSVLLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP        
       .:                                                          
CCDS82 LVAPRFLEVETSWPVDCTLDGLFPASEAQVYLALGDQMLNATVMNHGDTLTATATATARA
       150       160       170       180       190       200       

>>CCDS42500.1 ICAM4 gene_id:3386|Hs108|chr19              (237 aa)
 initn: 196 init1:  95 opt: 280  Z-score: 347.1  bits: 71.8 E(32554): 5.1e-13
Smith-Waterman score: 280; 28.0% identity (62.5% similar) in 200 aa overlap (20-217:41-234)

                          10        20        30        40         
pF1KB6            MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCS
                                     :..    : :.. :. .::.:  :...:::
CCDS42 FFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCS
               20        30        40        50        60        70

      50        60        70        80         90       100        
pF1KB6 TTCNQPEVGGLETSLDKILLDEQAQWKHYLVSNI-SHDTVLQCHFTCSGKQESMNSNVSV
       ..: ::. ..:.: : .    .   :  : . .. . ... .:  ::.:: .  .: ...
CCDS42 NSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATSRITA
               80        90       100       110       120       130

      110       120       130       140       150       160        
pF1KB6 YQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP
       :.::..::  :.: ..  :...:..:.:  : :.  :.. : .:..... :.. . .   
CCDS42 YKPPHSVI--LEPPVLK-GRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESLERFTGLD
                140        150       160       170       180       

       170       180       190       200       210       220       
pF1KB6 -QEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVII
         ..: :.. .:  .:  .   : : :.:    : . .. :::  : . :          
CCDS42 LANVTLTYEFAAGPRDFWQPVICHARLNL---DGLVVRNSSAPITLMLGEAPL       
       190       200       210          220       230              

       230       240       250       260       270     
pF1KB6 VTVVSVLLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP




275 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:33:21 2016 done: Sat Nov  5 00:33:22 2016
 Total Scan time:  2.310 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com