Result of FASTA (omim) for
pFN21AE0510
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0510, 235 aa
1>>>pF1KE0510 235 - 235 aa - 235 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5034+/-0.000296; mu= 15.4642+/- 0.019
mean_var=92.5409+/-18.831, 0's: 0 Z-trim(119.0): 7 B-trim: 0 in 0/55
Lambda= 0.133324
statistics sampled from 32635 (32642) to 32635 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.383), width: 16
Scan time: 5.360
The best scores are: opt bits E(85289)
NP_741999 (OMIM: 608142) iron-sulfur cluster co-ch ( 235) 1620 320.8 1.3e-87
NP_001305243 (OMIM: 608142) iron-sulfur cluster co ( 150) 1045 210.0 1.8e-54
NP_001305244 (OMIM: 608142) iron-sulfur cluster co ( 143) 1041 209.3 2.9e-54
XP_005261416 (OMIM: 608142) PREDICTED: iron-sulfur ( 223) 985 198.7 7.1e-51
XP_016884109 (OMIM: 608142) PREDICTED: iron-sulfur ( 79) 480 101.1 5.7e-22
XP_016884108 (OMIM: 608142) PREDICTED: iron-sulfur ( 79) 480 101.1 5.7e-22
NP_001305245 (OMIM: 608142) iron-sulfur cluster co ( 79) 480 101.1 5.7e-22
>>NP_741999 (OMIM: 608142) iron-sulfur cluster co-chaper (235 aa)
initn: 1620 init1: 1620 opt: 1620 Z-score: 1694.2 bits: 320.8 E(85289): 1.3e-87
Smith-Waterman score: 1620; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KE0 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
130 140 150 160 170 180
190 200 210 220 230
pF1KE0 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
190 200 210 220 230
>>NP_001305243 (OMIM: 608142) iron-sulfur cluster co-cha (150 aa)
initn: 1045 init1: 1045 opt: 1045 Z-score: 1099.0 bits: 210.0 E(85289): 1.8e-54
Smith-Waterman score: 1045; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE0 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
::::::::::::::::::::::
NP_001 STLVNDAYKTLLAPLSRGLYLLNRKNLLTM
130 140 150
>>NP_001305244 (OMIM: 608142) iron-sulfur cluster co-cha (143 aa)
initn: 1041 init1: 1041 opt: 1041 Z-score: 1095.2 bits: 209.3 E(85289): 2.9e-54
Smith-Waterman score: 1041; 99.3% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE0 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
:::::::::::::::::::::.
NP_001 STLVNDAYKTLLAPLSRGLYLVS
130 140
>>XP_005261416 (OMIM: 608142) PREDICTED: iron-sulfur clu (223 aa)
initn: 985 init1: 985 opt: 985 Z-score: 1034.4 bits: 198.7 E(85289): 7.1e-51
Smith-Waterman score: 985; 100.0% identity (100.0% similar) in 156 aa overlap (80-235:68-223)
50 60 70 80 90 100
pF1KE0 PGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR
::::::::::::::::::::::::::::::
XP_005 HLTPLETTSALWTGTSDGFGKRARARDTSSNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR
40 50 60 70 80 90
110 120 130 140 150 160
pF1KE0 SQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEIN
100 110 120 130 140 150
170 180 190 200 210 220
pF1KE0 EKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK
160 170 180 190 200 210
230
pF1KE0 LKKIPL
::::::
XP_005 LKKIPL
220
>>XP_016884109 (OMIM: 608142) PREDICTED: iron-sulfur clu (79 aa)
initn: 480 init1: 480 opt: 480 Z-score: 515.4 bits: 101.1 E(85289): 5.7e-22
Smith-Waterman score: 480; 100.0% identity (100.0% similar) in 79 aa overlap (157-235:1-79)
130 140 150 160 170 180
pF1KE0 AYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIES
::::::::::::::::::::::::::::::
XP_016 MDRQFLIEIMEINEKLAEAESEAAMKEIES
10 20 30
190 200 210 220 230
pF1KE0 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
40 50 60 70
>>XP_016884108 (OMIM: 608142) PREDICTED: iron-sulfur clu (79 aa)
initn: 480 init1: 480 opt: 480 Z-score: 515.4 bits: 101.1 E(85289): 5.7e-22
Smith-Waterman score: 480; 100.0% identity (100.0% similar) in 79 aa overlap (157-235:1-79)
130 140 150 160 170 180
pF1KE0 AYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIES
::::::::::::::::::::::::::::::
XP_016 MDRQFLIEIMEINEKLAEAESEAAMKEIES
10 20 30
190 200 210 220 230
pF1KE0 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
40 50 60 70
>>NP_001305245 (OMIM: 608142) iron-sulfur cluster co-cha (79 aa)
initn: 480 init1: 480 opt: 480 Z-score: 515.4 bits: 101.1 E(85289): 5.7e-22
Smith-Waterman score: 480; 100.0% identity (100.0% similar) in 79 aa overlap (157-235:1-79)
130 140 150 160 170 180
pF1KE0 AYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIES
::::::::::::::::::::::::::::::
NP_001 MDRQFLIEIMEINEKLAEAESEAAMKEIES
10 20 30
190 200 210 220 230
pF1KE0 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
40 50 60 70
235 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 03:09:16 2016 done: Thu Nov 3 03:09:17 2016
Total Scan time: 5.360 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]