Result of FASTA (ccds) for pFN21AB7742
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7742, 486 aa
  1>>>pF1KB7742 486 - 486 aa - 486 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9299+/-0.00103; mu= -5.3887+/- 0.062
 mean_var=363.2057+/-73.563, 0's: 0 Z-trim(114.8): 39  B-trim: 3 in 1/53
 Lambda= 0.067297
 statistics sampled from 15296 (15327) to 15296 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.471), width:  16
 Scan time:  3.910

The best scores are:                                      opt bits E(32554)
CCDS3003.1 HCLS1 gene_id:3059|Hs108|chr3           ( 486) 3301 334.2 1.9e-91
CCDS77800.1 HCLS1 gene_id:3059|Hs108|chr3          ( 449) 2395 246.2 5.4e-65
CCDS8197.1 CTTN gene_id:2017|Hs108|chr11           ( 513) 1120 122.5 1.1e-27
CCDS53676.1 CTTN gene_id:2017|Hs108|chr11          ( 634) 1120 122.6 1.3e-27
CCDS41680.1 CTTN gene_id:2017|Hs108|chr11          ( 550) 1111 121.6 2.1e-27


>>CCDS3003.1 HCLS1 gene_id:3059|Hs108|chr3                (486 aa)
 initn: 3301 init1: 3301 opt: 3301  Z-score: 1755.3  bits: 334.2 E(32554): 1.9e-91
Smith-Waterman score: 3301; 99.6% identity (100.0% similar) in 486 aa overlap (1-486:1-486)

               10        20        30        40        50        60
pF1KB7 MWKSVVGHDVSVSVETQGDDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MWKSVVGHDVSVSVETQGDDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRNK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS30 TEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGTRGLKA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KFESMAEEKRKREEEEKAQQVARRQQERKAVTKRSPEAPQPVIAMEEPAVPAPLPKKISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KFESMAEEKRKREEEEKAQQVARRQQERKAVTKRSPEAPQPVIAMEEPAVPAPLPKKISS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 EAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPRTLEGLQVEEEPVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPRTLEGLQVEEEPVY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 EAEPEPEPEPEPEPENDYEDVEEMDRHEQEDEPEGDYEEVLEPEDSSFSSALAGSSGCPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EAEPEPEPEPEPEPENDYEDVEEMDRHEQEDEPEGDYEEVLEPEDSSFSSALAGSSGCPA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 GAGAGAVALGISAVALYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPAN
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GAGAGAVALGISAVAVYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPAN
              430       440       450       460       470       480

             
pF1KB7 YVKLLE
       ::::::
CCDS30 YVKLLE
             

>>CCDS77800.1 HCLS1 gene_id:3059|Hs108|chr3               (449 aa)
 initn: 2375 init1: 2375 opt: 2395  Z-score: 1280.4  bits: 246.2 E(32554): 5.4e-65
Smith-Waterman score: 2955; 92.0% identity (92.4% similar) in 486 aa overlap (1-486:1-449)

               10        20        30        40        50        60
pF1KB7 MWKSVVGHDVSVSVETQGDDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MWKSVVGHDVSVSVETQGDDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRNK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKGE
       :::::::::::::::::::::::::::::::::                           
CCDS77 GGKYGVERDRADKSAVGFDYKGEVEKHTSQKDY---------------------------
              130       140       150                              

              190       200       210       220       230       240
pF1KB7 TEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLKA
                 ::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS77 ----------AKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGTRGLKA
                     160       170       180       190       200   

              250       260       270       280       290       300
pF1KB7 KFESMAEEKRKREEEEKAQQVARRQQERKAVTKRSPEAPQPVIAMEEPAVPAPLPKKISS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KFESMAEEKRKREEEEKAQQVARRQQERKAVTKRSPEAPQPVIAMEEPAVPAPLPKKISS
           210       220       230       240       250       260   

              310       320       330       340       350       360
pF1KB7 EAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPRTLEGLQVEEEPVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPRTLEGLQVEEEPVY
           270       280       290       300       310       320   

              370       380       390       400       410       420
pF1KB7 EAEPEPEPEPEPEPENDYEDVEEMDRHEQEDEPEGDYEEVLEPEDSSFSSALAGSSGCPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EAEPEPEPEPEPEPENDYEDVEEMDRHEQEDEPEGDYEEVLEPEDSSFSSALAGSSGCPA
           330       340       350       360       370       380   

              430       440       450       460       470       480
pF1KB7 GAGAGAVALGISAVALYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPAN
       :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GAGAGAVALGISAVAVYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPAN
           390       400       410       420       430       440   

             
pF1KB7 YVKLLE
       ::::::
CCDS77 YVKLLE
             

>>CCDS8197.1 CTTN gene_id:2017|Hs108|chr11                (513 aa)
 initn: 1361 init1: 1049 opt: 1120  Z-score: 610.6  bits: 122.5 E(32554): 1.1e-27
Smith-Waterman score: 1392; 44.3% identity (69.6% similar) in 519 aa overlap (1-484:1-511)

               10         20        30        40        50         
pF1KB7 MWKSVVGHDVSVSVETQG-DDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRN
       :::. .:: ::.. .  : :::.::::::::.:::::::::::..:::. ::::::.::.
CCDS81 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB7 KVSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKG
       .: .::..:..::.:.::::::::::.::::.:::::::::::: ... :: ::.:...:
CCDS81 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB7 FGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKG
       ::::.::. ::.:.:::::.:.:..:::.:::::: ::::.:::. :. ::.:.:.::.:
CCDS81 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB7 ETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLK
       .::::::::::.:::::.:::.::.:::::::: :... :  ...      . .:  :..
CCDS81 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGF-EYQGKTEKHESQKDYVKGFGGKFGVQ
              190       200       210        220       230         

     240          250       260               270       280        
pF1KB7 AKFE---SMAEEKRKREEEEKAQQVARR--------QQERKAVTKRSPEAPQPVIAMEEP
       .  .   ... ..... . ...:.   .        :..:   .  . :    : .  . 
CCDS81 TDRQDKCALGWDHQEKLQLHESQKDYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQK
     240       250       260       270       280       290         

      290        300       310       320       330       340       
pF1KB7 AVPAP-LPKKISSEAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPR
       .::.  . .: :.      .    .:.:  : .. . .      : . .. .:      :
CCDS81 TVPVEAVTSKTSNIRANFENLAKEKEQEDRRKAEAERA------QRMAKERQEQEE-ARR
     300       310       320       330             340        350  

       350       360       370        380               390        
pF1KB7 TLEGLQVEEEPVYEAEPEPEPEPEPEPEND-YEDVE----EMDRHEQ----EDEP-----
        ::     .  .  . : :.:  :  : .  :::.     :.. .      : ::     
CCDS81 KLEEQARAKTQTPPVSPAPQPTEERLPSSPVYEDAASFKAELSYRGPVSGTEPEPVYSME
            360       370       380       390       400       410  

           400       410        420              430       440     
pF1KB7 EGDYEEVLEPEDSSFSS-ALAGSSGCPAGAGAGAVA-------LGISAVALYDYQGEGSD
        .::.:.   .  .... :.  :.  :.   :   .       :::.::::::::. :.:
CCDS81 AADYREASSQQGLAYATEAVYESAEAPGHYPAEDSTYDEYENDLGITAVALYDYQAAGDD
            420       430       440       450       460       470  

         450       460       470       480      
pF1KB7 ELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPANYVKLLE
       :.::::::.::.:::.:.::::: :.:..::::::::.:  
CCDS81 EISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ
            480       490       500       510   

>>CCDS53676.1 CTTN gene_id:2017|Hs108|chr11               (634 aa)
 initn: 1303 init1: 1049 opt: 1120  Z-score: 609.4  bits: 122.6 E(32554): 1.3e-27
Smith-Waterman score: 1334; 43.6% identity (69.0% similar) in 509 aa overlap (1-474:1-501)

               10         20        30        40        50         
pF1KB7 MWKSVVGHDVSVSVETQG-DDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRN
       :::. .:: ::.. .  : :::.::::::::.:::::::::::..:::. ::::::.::.
CCDS53 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB7 KVSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKG
       .: .::..:..::.:.::::::::::.::::.:::::::::::: ... :: ::.:...:
CCDS53 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB7 FGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKG
       ::::.::. ::.:.:::::.:.:..:::.:::::: ::::.:::. :. ::.:.:.::.:
CCDS53 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB7 ETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLK
       .::::::::::.:::::.:::.::.:::::::: :... :  ...      . .:  :..
CCDS53 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGF-EYQGKTEKHESQKDYVKGFGGKFGVQ
              190       200       210        220       230         

     240          250       260               270       280        
pF1KB7 AKFE---SMAEEKRKREEEEKAQQVARR--------QQERKAVTKRSPEAPQPVIAMEEP
       .  .   ... ..... . ...:.   .        :..:   .  . :    : .  . 
CCDS53 TDRQDKCALGWDHQEKLQLHESQKDYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQK
     240       250       260       270       280       290         

      290        300       310       320       330       340       
pF1KB7 AVPAP-LPKKISSEAWPPVGTPPSSESEPVRTSREHPVPLLPIRQTLPEDNEEPPALPPR
       .::.  . .: :.      .    .:.:  : .. . .      : . .. .:      :
CCDS53 TVPVEAVTSKTSNIRANFENLAKEKEQEDRRKAEAERA------QRMAKERQEQEE-ARR
     300       310       320       330             340        350  

       350       360       370        380               390        
pF1KB7 TLEGLQVEEEPVYEAEPEPEPEPEPEPEND-YEDVE----EMDRHEQ----EDEP-----
        ::     .  .  . : :.:  :  : .  :::.     :.. .      : ::     
CCDS53 KLEEQARAKTQTPPVSPAPQPTEERLPSSPVYEDAASFKAELSYRGPVSGTEPEPVYSME
            360       370       380       390       400       410  

           400       410        420              430       440     
pF1KB7 EGDYEEVLEPEDSSFSS-ALAGSSGCPAGAGAGAVA-------LGISAVALYDYQGEGSD
        .::.:.   .  .... :.  :.  :.   :   .       :::.::::::::. :.:
CCDS53 AADYREASSQQGLAYATEAVYESAEAPGHYPAEDSTYDEYENDLGITAVALYDYQAAGDD
            420       430       440       450       460       470  

         450       460       470       480                         
pF1KB7 ELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPANYVKLLE                   
       :.::::::.::.:::.:.::::: :.:.:                               
CCDS53 EISFDPDDIITNIEMIDDGWWRGVCKGRFRELAFSCVRVALVPIKCSRDLPGQARGLRSA
            480       490       500       510       520       530  

>>CCDS41680.1 CTTN gene_id:2017|Hs108|chr11               (550 aa)
 initn: 1996 init1: 1049 opt: 1111  Z-score: 605.5  bits: 121.6 E(32554): 2.1e-27
Smith-Waterman score: 1177; 41.0% identity (64.2% similar) in 520 aa overlap (1-455:1-519)

               10         20        30        40        50         
pF1KB7 MWKSVVGHDVSVSVETQG-DDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRN
       :::. .:: ::.. .  : :::.::::::::.:::::::::::..:::. ::::::.::.
CCDS41 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRE
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB7 KVSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAKG
       .: .::..:..::.:.::::::::::.::::.:::::::::::: ... :: ::.:...:
CCDS41 NVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRG
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB7 FGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYKG
       ::::.::. ::.:.:::::.:.:..:::.:::::: ::::.:::. :. ::.:.:.::.:
CCDS41 FGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQG
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB7 ETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEAPTTAYKKTTPIEAASSGARGLK
       .::::::::::.:::::.:::.::.:::::::: :... :  ...      . .:  :..
CCDS41 KTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGF-EYQGKTEKHESQKDYVKGFGGKFGVQ
              190       200       210        220       230         

     240             250       260               270            280
pF1KB7 AKFESMA------EEKRKREEEEKAQQ--------VARRQQERKAV-----TKRSPEAPQ
       .  ..        .:: . .: .:  .        :  ..:.  ::      : . .  :
CCDS41 TDRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQDSAAVGFDYKEKLAKHESQ
     240       250       260       270       280       290         

                           290       300       310        320      
pF1KB7 PVIA-------------MEEPAVPAPLPKKISSEAWPPVGTPP-SSESEPVRTSREHPVP
          .             :.. :       ..::     : .   .:..  .:.. :. . 
CCDS41 QDYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAK
     300       310       320       330       340       350         

        330       340       350          360       370             
pF1KB7 LLPIRQTLPEDNEEPPALPPRTLEGLQVE---EEPVYEAEPEPEPEPEPEPEND------
           ..    . :.   .  .  :  ...   :: .      :   : :.: ..      
CCDS41 EKEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPAPQPTEERLPSSP
     360       370       380       390       400       410         

        380               390            400       410        420  
pF1KB7 -YEDVE----EMDRHEQ----EDEP-----EGDYEEVLEPEDSSFSS-ALAGSSGCPAGA
        :::.     :.. .      : ::      .::.:.   .  .... :.  :.  :.  
CCDS41 VYEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATEAVYESAEAPGHY
     420       430       440       450       460       470         

                   430       440       450       460       470     
pF1KB7 GAGAVA-------LGISAVALYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFG
        :   .       :::.::::::::. :.::.::::::.:                    
CCDS41 PAEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYG
     480       490       500       510       520       530         

         480      
pF1KB7 LFPANYVKLLE
                  
CCDS41 LFPANYVELRQ
     540       550




486 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:08:14 2016 done: Fri Nov  4 22:08:15 2016
 Total Scan time:  3.910 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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