Result of FASTA (omim) for pFN21AE0359
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0359, 582 aa
  1>>>pF1KE0359 582 - 582 aa - 582 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4817+/-0.000333; mu= 10.3918+/- 0.021
 mean_var=150.5999+/-31.025, 0's: 0 Z-trim(120.3): 107  B-trim: 1420 in 1/55
 Lambda= 0.104511
 statistics sampled from 35322 (35437) to 35322 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.415), width:  16
 Scan time:  9.230

The best scores are:                                      opt bits E(85289)
NP_001518 (OMIM: 605164) histone deacetylase 2 [Ho ( 488) 3343 515.7 1.4e-145
XP_016866288 (OMIM: 605164) PREDICTED: histone dea ( 458) 3116 481.5 2.6e-135
XP_011534090 (OMIM: 605164) PREDICTED: histone dea ( 458) 3116 481.5 2.6e-135
NP_004955 (OMIM: 601241) histone deacetylase 1 [Ho ( 482) 2880 445.9 1.4e-124
NP_003874 (OMIM: 605166) histone deacetylase 3 [Ho ( 428) 1833 288.0 4.3e-77
XP_011539611 (OMIM: 601241) PREDICTED: histone dea ( 289) 1614 254.9 2.7e-67
NP_060956 (OMIM: 300269) histone deacetylase 8 iso ( 377) 1089 175.8 2.3e-43
XP_011529288 (OMIM: 300269) PREDICTED: histone dea ( 441) 1083 174.9 4.8e-43
XP_011529289 (OMIM: 300269) PREDICTED: histone dea ( 379)  992 161.2 5.8e-39
XP_011535999 (OMIM: 605166) PREDICTED: histone dea ( 241)  933 152.1 1.9e-36
XP_016885135 (OMIM: 300269) PREDICTED: histone dea ( 274)  882 144.5 4.4e-34
NP_001159890 (OMIM: 300269) histone deacetylase 8  ( 286)  821 135.3 2.7e-31
XP_016885131 (OMIM: 300269) PREDICTED: histone dea ( 350)  816 134.6 5.3e-31
NP_001159891 (OMIM: 300269) histone deacetylase 8  ( 256)  721 120.2 8.5e-27
XP_016885130 (OMIM: 300269) PREDICTED: histone dea ( 389)  536 92.4 2.9e-18
XP_016885133 (OMIM: 300269) PREDICTED: histone dea ( 324)  530 91.4 4.8e-18
XP_016885129 (OMIM: 300269) PREDICTED: histone dea ( 415)  530 91.5 5.8e-18
XP_016885136 (OMIM: 300269) PREDICTED: histone dea ( 268)  469 82.2 2.4e-15
NP_001308157 (OMIM: 300272,300863) histone deacety (1215)  389 70.6 3.4e-11
NP_006035 (OMIM: 300272,300863) histone deacetylas (1215)  389 70.6 3.4e-11
NP_001308156 (OMIM: 300272,300863) histone deacety (1215)  389 70.6 3.4e-11
NP_001308158 (OMIM: 300272,300863) histone deacety (1215)  389 70.6 3.4e-11
NP_001308155 (OMIM: 300272,300863) histone deacety (1215)  389 70.6 3.4e-11
NP_001308154 (OMIM: 300272,300863) histone deacety (1229)  389 70.6 3.4e-11
XP_016885134 (OMIM: 300269) PREDICTED: histone dea ( 315)  374 67.9 5.6e-11
XP_016885132 (OMIM: 300269) PREDICTED: histone dea ( 341)  368 67.0 1.1e-10
XP_016868317 (OMIM: 606543) PREDICTED: histone dea (1025)  368 67.4 2.6e-10
NP_001308806 (OMIM: 606543) histone deacetylase 9  (1025)  368 67.4 2.6e-10
NP_001308826 (OMIM: 606543) histone deacetylase 9  (1025)  368 67.4 2.6e-10
XP_011513948 (OMIM: 606543) PREDICTED: histone dea (1035)  368 67.4 2.7e-10
XP_011513947 (OMIM: 606543) PREDICTED: histone dea (1038)  368 67.4 2.7e-10
XP_011513946 (OMIM: 606543) PREDICTED: histone dea (1038)  368 67.4 2.7e-10
XP_016868316 (OMIM: 606543) PREDICTED: histone dea (1043)  368 67.4 2.7e-10
XP_011513944 (OMIM: 606543) PREDICTED: histone dea (1043)  368 67.4 2.7e-10
XP_011513943 (OMIM: 606543) PREDICTED: histone dea (1043)  368 67.4 2.7e-10
XP_011513936 (OMIM: 606543) PREDICTED: histone dea (1044)  368 67.4 2.7e-10
NP_001308797 (OMIM: 606543) histone deacetylase 9  (1044)  368 67.4 2.7e-10
NP_848510 (OMIM: 606543) histone deacetylase 9 iso (1066)  368 67.4 2.7e-10
XP_016868315 (OMIM: 606543) PREDICTED: histone dea (1066)  368 67.4 2.7e-10
XP_011513940 (OMIM: 606543) PREDICTED: histone dea (1069)  368 67.4 2.7e-10
XP_011513941 (OMIM: 606543) PREDICTED: histone dea (1069)  368 67.4 2.7e-10
NP_848512 (OMIM: 606543) histone deacetylase 9 iso (1069)  368 67.4 2.7e-10
XP_011513939 (OMIM: 606543) PREDICTED: histone dea (1071)  368 67.4 2.7e-10
XP_011513938 (OMIM: 606543) PREDICTED: histone dea (1071)  368 67.4 2.7e-10
XP_011513950 (OMIM: 606543) PREDICTED: histone dea (1074)  368 67.4 2.7e-10
XP_011513937 (OMIM: 606543) PREDICTED: histone dea (1074)  368 67.4 2.7e-10
XP_011513951 (OMIM: 606543) PREDICTED: histone dea (1074)  368 67.4 2.7e-10
XP_011513931 (OMIM: 606543) PREDICTED: histone dea (1088)  368 67.4 2.8e-10
XP_011513933 (OMIM: 606543) PREDICTED: histone dea (1096)  368 67.4 2.8e-10
NP_478056 (OMIM: 606543) histone deacetylase 9 iso (1011)  342 63.5   4e-09


>>NP_001518 (OMIM: 605164) histone deacetylase 2 [Homo s  (488 aa)
 initn: 3343 init1: 3343 opt: 3343  Z-score: 2734.7  bits: 515.7 E(85289): 1.4e-145
Smith-Waterman score: 3343; 100.0% identity (100.0% similar) in 488 aa overlap (95-582:1-488)

           70        80        90       100       110       120    
pF1KE0 PFLSRPSRGGSSSSSSSRRRSPVAAVAGEPMAYSQGGGKKKVCYYYDGDIGNYYYGQGHP
                                     ::::::::::::::::::::::::::::::
NP_001                               MAYSQGGGKKKVCYYYDGDIGNYYYGQGHP
                                             10        20        30

          130       140       150       160       170       180    
pF1KE0 MKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSK
               40        50        60        70        80        90

          190       200       210       220       230       240    
pF1KE0 QMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASG
              100       110       120       130       140       150

          250       260       270       280       290       300    
pF1KE0 FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
              160       170       180       190       200       210

          310       320       330       340       350       360    
pF1KE0 DLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGD
              220       230       240       250       260       270

          370       380       390       400       410       420    
pF1KE0 RLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELP
              280       290       300       310       320       330

          430       440       450       460       470       480    
pF1KE0 YNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAV
              340       350       360       370       380       390

          490       500       510       520       530       540    
pF1KE0 HEDSGDEDGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HEDSGDEDGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEED
              400       410       420       430       440       450

          550       560       570       580  
pF1KE0 KKETEDKKTDVKEEDKSKDNSGEKTDTKGTKSEQLSNP
       ::::::::::::::::::::::::::::::::::::::
NP_001 KKETEDKKTDVKEEDKSKDNSGEKTDTKGTKSEQLSNP
              460       470       480        

>>XP_016866288 (OMIM: 605164) PREDICTED: histone deacety  (458 aa)
 initn: 3116 init1: 3116 opt: 3116  Z-score: 2550.2  bits: 481.5 E(85289): 2.6e-135
Smith-Waterman score: 3116; 100.0% identity (100.0% similar) in 458 aa overlap (125-582:1-458)

          100       110       120       130       140       150    
pF1KE0 MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
                                     ::::::::::::::::::::::::::::::
XP_016                               MKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
                                             10        20        30

          160       170       180       190       200       210    
pF1KE0 TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
               40        50        60        70        80        90

          220       230       240       250       260       270    
pF1KE0 GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
              100       110       120       130       140       150

          280       290       300       310       320       330    
pF1KE0 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
              160       170       180       190       200       210

          340       350       360       370       380       390    
pF1KE0 IFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLG
              220       230       240       250       260       270

          400       410       420       430       440       450    
pF1KE0 GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
              280       290       300       310       320       330

          460       470       480       490       500       510    
pF1KE0 EKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
              340       350       360       370       380       390

          520       530       540       550       560       570    
pF1KE0 FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKTDTKGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKTDTKGT
              400       410       420       430       440       450

          580  
pF1KE0 KSEQLSNP
       ::::::::
XP_016 KSEQLSNP
               

>>XP_011534090 (OMIM: 605164) PREDICTED: histone deacety  (458 aa)
 initn: 3116 init1: 3116 opt: 3116  Z-score: 2550.2  bits: 481.5 E(85289): 2.6e-135
Smith-Waterman score: 3116; 100.0% identity (100.0% similar) in 458 aa overlap (125-582:1-458)

          100       110       120       130       140       150    
pF1KE0 MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
                                     ::::::::::::::::::::::::::::::
XP_011                               MKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
                                             10        20        30

          160       170       180       190       200       210    
pF1KE0 TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
               40        50        60        70        80        90

          220       230       240       250       260       270    
pF1KE0 GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
              100       110       120       130       140       150

          280       290       300       310       320       330    
pF1KE0 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
              160       170       180       190       200       210

          340       350       360       370       380       390    
pF1KE0 IFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLG
              220       230       240       250       260       270

          400       410       420       430       440       450    
pF1KE0 GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYM
              280       290       300       310       320       330

          460       470       480       490       500       510    
pF1KE0 EKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
              340       350       360       370       380       390

          520       530       540       550       560       570    
pF1KE0 FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKTDTKGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEEDKSKDNSGEKTDTKGT
              400       410       420       430       440       450

          580  
pF1KE0 KSEQLSNP
       ::::::::
XP_011 KSEQLSNP
               

>>NP_004955 (OMIM: 601241) histone deacetylase 1 [Homo s  (482 aa)
 initn: 2924 init1: 2811 opt: 2880  Z-score: 2357.5  bits: 445.9 E(85289): 1.4e-124
Smith-Waterman score: 2880; 85.9% identity (95.0% similar) in 483 aa overlap (95-577:1-478)

           70        80        90       100       110       120    
pF1KE0 PFLSRPSRGGSSSSSSSRRRSPVAAVAGEPMAYSQGGGKKKVCYYYDGDIGNYYYGQGHP
                                     :: .::  ..:::::::::.::::::::::
NP_004                               MAQTQGT-RRKVCYYYDGDVGNYYYGQGHP
                                              10        20         

          130       140       150       160       170       180    
pF1KE0 MKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSK
       ::::::::::::::::::::::::::::::.::::::::::.::::::::::::::::::
NP_004 MKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSK
      30        40        50        60        70        80         

          190       200       210       220       230       240    
pF1KE0 QMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASG
       ::::::::::::::::::::::::::::::.:::::.::::.::::::::::::::::::
NP_004 QMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASG
      90       100       110       120       130       140         

          250       260       270       280       290       300    
pF1KE0 FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
     150       160       170       180       190       200         

          310       320       330       340       350       360    
pF1KE0 DLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGD
       ::::::::::::::::.:.:::::::::  ::::..::::::.::::::::::.::::::
NP_004 DLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGD
     210       220       230       240       250       260         

          370       380       390       400       410       420    
pF1KE0 RLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELP
       ::::::::.:::::::: ::.::::.:::::::::::::::::::::::::: :::::::
NP_004 RLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELP
     270       280       290       300       310       320         

          430       440       450       460       470       480    
pF1KE0 YNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAV
       :::::::::::::::::::::::::: ::.:::::::::::::::::::::::::::::.
NP_004 YNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAI
     330       340       350       360       370       380         

          490       500       510       520       530       540    
pF1KE0 HEDSGDEDGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEED
        :.::::: .:::::::: .:::::::.:::::::.::::::.: .. :: ::... :..
NP_004 PEESGDEDEDDPDKRISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKK-AKRVKTEDE
     390       400       410       420       430        440        

          550       560       570       580  
pF1KE0 KKETEDKKTDVKEEDKSKDNSGEKTDTKGTKSEQLSNP
       :..  ..: .: ::.:.:.   :: ..::.: :     
NP_004 KEKDPEEKKEVTEEEKTKE---EKPEAKGVKEEVKLA 
      450       460          470       480   

>>NP_003874 (OMIM: 605166) histone deacetylase 3 [Homo s  (428 aa)
 initn: 1131 init1: 978 opt: 1833  Z-score: 1505.1  bits: 288.0 E(85289): 4.3e-77
Smith-Waterman score: 1833; 58.8% identity (84.4% similar) in 422 aa overlap (104-523:3-421)

            80        90       100       110       120       130   
pF1KE0 GSSSSSSSRRRSPVAAVAGEPMAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMT
                                     : : :.:: :.::..:: ::::::::. .:
NP_003                             MAKTVAYFYDPDVGNFHYGAGHPMKPHRLALT
                                           10        20        30  

           140       150       160       170       180       190   
pF1KE0 HNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGE
       :.:.:.::::.:: ...:..:. ..: ..::..:: ::. . : ::. ..:... ::::.
NP_003 HSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGD
             40        50        60        70        80        90  

           200       210       220       230       240       250   
pF1KE0 DCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVL
       ::::: ::::::.  ::.:. ::..:: .  :.:.::::::::::: ::::::::::::.
NP_003 DCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVI
            100       110       120       130       140       150  

           260       270       280       290       300        310  
pF1KE0 AILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYF-PGTGDLRDIGAG
       .:::::::: :::::::::::::::.:::: :::::::::::::.:: :::::. ..:: 
NP_003 GILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAE
            160       170       180       190       200       210  

            320       330       340       350       360       370  
pF1KE0 KGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLT
       .:.:: .: :.::::::.:: ..:.:.:..:...:::. .:::::::::. ::::::::.
NP_003 SGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLS
            220       230       240       250       260       270  

            380       390       400       410       420       430  
pF1KE0 VKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYF
       ..::..::: ::.::.:::.:::::::.:::::::::::.. ..  : .::::..:::::
NP_003 IRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYF
            280       290       300       310       320       330  

            440        450       460       470       480       490 
pF1KE0 GPDFKLHISPSN-MTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDE
       .::: :: . :. . :::. .:...:.: .::::.:: :::.::.. .: : .  :  ::
NP_003 APDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDE
            340       350       360       370       380       390  

             500       510       520       530       540       550 
pF1KE0 DGEDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDK
          : ..: . . . .:    .:: :.. ...                            
NP_003 --ADAEER-GPEENYSRPEAPNEFYDGDHDNDKESDVEI                     
               400       410       420                             

             560       570       580  
pF1KE0 KTDVKEEDKSKDNSGEKTDTKGTKSEQLSNP

>>XP_011539611 (OMIM: 601241) PREDICTED: histone deacety  (289 aa)
 initn: 1677 init1: 1565 opt: 1614  Z-score: 1329.0  bits: 254.9 E(85289): 2.7e-67
Smith-Waterman score: 1614; 80.6% identity (92.7% similar) in 289 aa overlap (289-577:1-285)

      260       270       280       290       300       310        
pF1KE0 LKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYA
                                     ::::::::::::::::::::::::::::::
XP_011                               MTVSFHKYGEYFPGTGDLRDIGAGKGKYYA
                                             10        20        30

      320       330       340       350       360       370        
pF1KE0 VNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAK
       ::.:.:::::::::  ::::..::::::.::::::::::.::::::::::::::.:::::
XP_011 VNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAK
               40        50        60        70        80        90

      380       390       400       410       420       430        
pF1KE0 CVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKL
       ::: ::.::::.:::::::::::::::::::::::::: :::::::::::::::::::::
XP_011 CVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKL
              100       110       120       130       140       150

      440       450       460       470       480       490        
pF1KE0 HISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDK
       :::::::::::: ::.:::::::::::::::::::::::::::::. :.::::: .::::
XP_011 HISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEDDPDK
              160       170       180       190       200       210

      500       510       520       530       540       550        
pF1KE0 RISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEE
       :::: .:::::::.:::::::.::::::.: .. :: ::... :..:..  ..: .: ::
XP_011 RISICSSDKRIACEEEFSDSEEEGEGGRKNSSNFKK-AKRVKTEDEKEKDPEEKKEVTEE
              220       230       240        250       260         

      560       570       580  
pF1KE0 DKSKDNSGEKTDTKGTKSEQLSNP
       .:.:.   :: ..::.: :     
XP_011 EKTKE---EKPEAKGVKEEVKLA 
     270          280          

>>NP_060956 (OMIM: 300269) histone deacetylase 8 isoform  (377 aa)
 initn: 953 init1: 551 opt: 1089  Z-score: 899.6  bits: 175.8 E(85289): 2.3e-43
Smith-Waterman score: 1089; 43.4% identity (77.1% similar) in 341 aa overlap (127-466:35-374)

        100       110       120       130       140       150      
pF1KE0 YSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATA
                                     :.:  :.:.:.  :.:...:.: .:. :. 
NP_060 EEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASM
           10        20        30        40        50        60    

        160       170       180       190       200       210      
pF1KE0 EEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGA
       :::. .:.: :.. :...  .. ...  ... ...: :::. .:.:..     :.....:
NP_060 EEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAA
           70        80        90        100       110       120   

        220       230       240       250       260       270      
pF1KE0 VKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGD
         :   .  .:.::.:: :::::.:::::::.:: ::.::.: .  .:.::.:.:.::::
NP_060 QCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGD
           130       140       150       160       170       180   

        280       290        300       310       320       330     
pF1KE0 GVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQI
       :::.::  :..:::::.::..  .::::::. :.: :::.::.:: :..:::.::.: ::
NP_060 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI
           190       200       210       220       230       240   

         340       350       360       370       380       390     
pF1KE0 FKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGG
        . ....:.. ..:.::::: :::...:: .  ::.:  : .::.. .  ..:  :.:::
NP_060 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGG
           250       260       270       280       290       300   

         400       410       420       430       440       450     
pF1KE0 GGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYME
       :::.. :.:::::: :.: :   . .:.: ...:  .:::. :.:.::   ..: :. ..
NP_060 GGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQ
           310       320       330       340       350       360   

         460       470       480       490       500       510     
pF1KE0 KIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEF
       .: . .  ::.                                                 
NP_060 QILNYIKGNLKHVV                                              
           370                                                     

>>XP_011529288 (OMIM: 300269) PREDICTED: histone deacety  (441 aa)
 initn: 525 init1: 525 opt: 1083  Z-score: 893.8  bits: 174.9 E(85289): 4.8e-43
Smith-Waterman score: 1083; 44.0% identity (77.7% similar) in 332 aa overlap (127-457:73-403)

        100       110       120       130       140       150      
pF1KE0 YSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATA
                                     :.:  :.:.:.  :.:...:.: .:. :. 
XP_011 EEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASM
             50        60        70        80        90       100  

        160       170       180       190       200       210      
pF1KE0 EEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGA
       :::. .:.: :.. :...  .. ...  ... ...: :::. .:.:..     :.....:
XP_011 EEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAA
            110       120       130        140       150       160 

        220       230       240       250       260       270      
pF1KE0 VKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGD
         :   .  .:.::.:: :::::.:::::::.:: ::.::.: .  .:.::.:.:.::::
XP_011 QCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGD
             170       180       190       200       210       220 

        280       290        300       310       320       330     
pF1KE0 GVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQI
       :::.::  :..:::::.::..  .::::::. :.: :::.::.:: :..:::.::.: ::
XP_011 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI
             230       240       250       260       270       280 

         340       350       360       370       380       390     
pF1KE0 FKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGG
        . ....:.. ..:.::::: :::...:: .  ::.:  : .::.. .  ..:  :.:::
XP_011 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGG
             290       300       310       320       330       340 

         400       410       420       430       440       450     
pF1KE0 GGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYME
       :::.. :.:::::: :.: :   . .:.: ...:  .:::. :.:.::   ..: :. ..
XP_011 GGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQ
             350       360       370       380       390       400 

         460       470       480       490       500       510     
pF1KE0 KIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKRISIRASDKRIACDEEF
       .:                                                          
XP_011 QILNYIKEKWPVGFGAQCFYLGKCGKAKTTEGQRNLKHVV                    
             410       420       430       440                     

>>XP_011529289 (OMIM: 300269) PREDICTED: histone deacety  (379 aa)
 initn: 841 init1: 439 opt: 992  Z-score: 820.5  bits: 161.2 E(85289): 5.8e-39
Smith-Waterman score: 992; 45.2% identity (78.3% similar) in 299 aa overlap (127-424:73-370)

        100       110       120       130       140       150      
pF1KE0 YSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATA
                                     :.:  :.:.:.  :.:...:.: .:. :. 
XP_011 EEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASM
             50        60        70        80        90       100  

        160       170       180       190       200       210      
pF1KE0 EEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGA
       :::. .:.: :.. :...  .. ...  ... ...: :::. .:.:..     :.....:
XP_011 EEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAA
            110       120       130        140       150       160 

        220       230       240       250       260       270      
pF1KE0 VKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGD
         :   .  .:.::.:: :::::.:::::::.:: ::.::.: .  .:.::.:.:.::::
XP_011 QCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGD
             170       180       190       200       210       220 

        280       290        300       310       320       330     
pF1KE0 GVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQI
       :::.::  :..:::::.::..  .::::::. :.: :::.::.:: :..:::.::.: ::
XP_011 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI
             230       240       250       260       270       280 

         340       350       360       370       380       390     
pF1KE0 FKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGG
        . ....:.. ..:.::::: :::...:: .  ::.:  : .::.. .  ..:  :.:::
XP_011 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGG
             290       300       310       320       330       340 

         400       410       420       430       440       450     
pF1KE0 GGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYME
       :::.. :.:::::: :.: :   . .:.:                               
XP_011 GGYNLANTARCWTYLTGVILGKTLSSEIPDHENMPVNT                      
             350       360       370                               

>>XP_011535999 (OMIM: 605166) PREDICTED: histone deacety  (241 aa)
 initn: 869 init1: 716 opt: 933  Z-score: 775.2  bits: 152.1 E(85289): 1.9e-36
Smith-Waterman score: 933; 54.4% identity (82.3% similar) in 237 aa overlap (289-523:1-234)

      260       270       280       290       300        310       
pF1KE0 LKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYF-PGTGDLRDIGAGKGKYY
                                     :::::::::.:: :::::. ..:: .:.::
XP_011                               MTVSFHKYGNYFFPGTGDMYEVGAESGRYY
                                             10        20        30

       320       330       340       350       360       370       
pF1KE0 AVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHA
        .: :.::::::.:: ..:.:.:..:...:::. .:::::::::. ::::::::...::.
XP_011 CLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHG
               40        50        60        70        80        90

       380       390       400       410       420       430       
pF1KE0 KCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFK
       .::: ::.::.:::.:::::::.:::::::::::.. ..  : .::::..:::::.::: 
XP_011 ECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFT
              100       110       120       130       140       150

       440        450       460       470       480       490      
pF1KE0 LHISPSN-MTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDGEDP
       :: . :. . :::. .:...:.: .::::.:: :::.::.. .: : .  :  ::   : 
XP_011 LHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDVPADLLTYDRTDE--ADA
              160       170       180       190       200          

        500       510       520       530       540       550      
pF1KE0 DKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVK
       ..: . . . .:    .:: :.. ...                                 
XP_011 EER-GPEENYSRPEAPNEFYDGDHDNDKESDVEI                          
      210        220       230       240                           




582 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:00:10 2016 done: Mon Nov  7 04:00:11 2016
 Total Scan time:  9.230 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com