FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0503, 220 aa 1>>>pF1KE0503 220 - 220 aa - 220 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2077+/-0.000349; mu= 5.4612+/- 0.022 mean_var=136.1247+/-26.491, 0's: 0 Z-trim(118.7): 7 B-trim: 53 in 1/55 Lambda= 0.109927 statistics sampled from 31921 (31928) to 31921 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.374), width: 16 Scan time: 7.100 The best scores are: opt bits E(85289) NP_005666 (OMIM: 192430,601279) protein DGCR6 [Hom ( 220) 1438 238.8 5.2e-63 NP_150282 (OMIM: 609459) protein DGCR6L [Homo sapi ( 220) 1393 231.7 7.4e-61 XP_011528696 (OMIM: 192430,601279) PREDICTED: prot ( 151) 878 149.9 2.1e-36 >>NP_005666 (OMIM: 192430,601279) protein DGCR6 [Homo sa (220 aa) initn: 1438 init1: 1438 opt: 1438 Z-score: 1252.2 bits: 238.8 E(85289): 5.2e-63 Smith-Waterman score: 1438; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE0 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL 130 140 150 160 170 180 190 200 210 220 pF1KE0 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP :::::::::::::::::::::::::::::::::::::::: NP_005 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP 190 200 210 220 >>NP_150282 (OMIM: 609459) protein DGCR6L [Homo sapiens] (220 aa) initn: 1393 init1: 1393 opt: 1393 Z-score: 1213.6 bits: 231.7 E(85289): 7.4e-61 Smith-Waterman score: 1393; 97.3% identity (99.1% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE0 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 MERYAAALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: NP_150 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVVQAAQQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: NP_150 RELEAVEHRIREEQRAMDQKIILELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL 130 140 150 160 170 180 190 200 210 220 pF1KE0 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP ::::::::::: ::.:::::::::: :::::::::::::: NP_150 ELIRKLQQRGCRAGNAALGLGGPWQSPAAQCDQKGSPVPP 190 200 210 220 >>XP_011528696 (OMIM: 192430,601279) PREDICTED: protein (151 aa) initn: 878 init1: 878 opt: 878 Z-score: 774.5 bits: 149.9 E(85289): 2.1e-36 Smith-Waterman score: 878; 100.0% identity (100.0% similar) in 130 aa overlap (91-220:22-151) 70 80 90 100 110 120 pF1KE0 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ :::::::::::::::::::::::::::::: XP_011 MEEAGVLPSADTPLAWLLCWVVLRQALRQKHQEAQQACRPHNLPVLQAAQQ 10 20 30 40 50 130 140 150 160 170 180 pF1KE0 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL 60 70 80 90 100 110 190 200 210 220 pF1KE0 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP :::::::::::::::::::::::::::::::::::::::: XP_011 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP 120 130 140 150 220 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 03:53:32 2016 done: Thu Nov 3 03:53:33 2016 Total Scan time: 7.100 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]