Result of FASTA (omim) for pFN21AE0132
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0132, 246 aa
  1>>>pF1KE0132 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9118+/-0.000479; mu= -1.9917+/- 0.030
 mean_var=190.9397+/-39.154, 0's: 0 Z-trim(114.7): 10  B-trim: 269 in 1/55
 Lambda= 0.092817
 statistics sampled from 24733 (24737) to 24733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.29), width:  16
 Scan time:  7.160

The best scores are:                                      opt bits E(85289)
NP_005736 (OMIM: 300398,300475) B-cell receptor-as ( 246) 1532 217.3 1.9e-56
NP_001243376 (OMIM: 300398,300475) B-cell receptor ( 246) 1532 217.3 1.9e-56
NP_001132913 (OMIM: 300398,300475) B-cell receptor ( 246) 1532 217.3 1.9e-56
NP_001132929 (OMIM: 300398,300475) B-cell receptor ( 313) 1532 217.4 2.4e-56


>>NP_005736 (OMIM: 300398,300475) B-cell receptor-associ  (246 aa)
 initn: 1532 init1: 1532 opt: 1532  Z-score: 1134.3  bits: 217.3 E(85289): 1.9e-56
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
              190       200       210       220       230       240

             
pF1KE0 MDKKEE
       ::::::
NP_005 MDKKEE
             

>>NP_001243376 (OMIM: 300398,300475) B-cell receptor-ass  (246 aa)
 initn: 1532 init1: 1532 opt: 1532  Z-score: 1134.3  bits: 217.3 E(85289): 1.9e-56
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
              190       200       210       220       230       240

             
pF1KE0 MDKKEE
       ::::::
NP_001 MDKKEE
             

>>NP_001132913 (OMIM: 300398,300475) B-cell receptor-ass  (246 aa)
 initn: 1532 init1: 1532 opt: 1532  Z-score: 1134.3  bits: 217.3 E(85289): 1.9e-56
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KE0 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQAAVDGP
              190       200       210       220       230       240

             
pF1KE0 MDKKEE
       ::::::
NP_001 MDKKEE
             

>>NP_001132929 (OMIM: 300398,300475) B-cell receptor-ass  (313 aa)
 initn: 1532 init1: 1532 opt: 1532  Z-score: 1132.7  bits: 217.4 E(85289): 2.4e-56
Smith-Waterman score: 1532; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:68-313)

                                             10        20        30
pF1KE0                               MSLQWTAVATFLYAEVFVVLLLCIPFISPK
                                     ::::::::::::::::::::::::::::::
NP_001 GEAALDVLTHVLEGAGNKLTSSCGKPSSNRMSLQWTAVATFLYAEVFVVLLLCIPFISPK
        40        50        60        70        80        90       

               40        50        60        70        80        90
pF1KE0 RWQKIFKSRLVELLVSYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWQKIFKSRLVELLVSYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAME
       100       110       120       130       140       150       

              100       110       120       130       140       150
pF1KE0 HFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKY
       160       170       180       190       200       210       

              160       170       180       190       200       210
pF1KE0 MEENDQLKKGAAVDGGKLDVGNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEENDQLKKGAAVDGGKLDVGNAEVKLEEENRSLKADLQKLKDELASTKQKLEKAENQVL
       220       230       240       250       260       270       

              220       230       240      
pF1KE0 AMRKQSEGLTKEYDRLLEEHAKLQAAVDGPMDKKEE
       ::::::::::::::::::::::::::::::::::::
NP_001 AMRKQSEGLTKEYDRLLEEHAKLQAAVDGPMDKKEE
       280       290       300       310   




246 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:08:19 2016 done: Mon Nov  7 04:08:20 2016
 Total Scan time:  7.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com