FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6103, 135 aa 1>>>pF1KE6103 135 - 135 aa - 135 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7484+/-0.000297; mu= 13.8539+/- 0.018 mean_var=53.9183+/-10.606, 0's: 0 Z-trim(116.9): 29 B-trim: 316 in 2/59 Lambda= 0.174665 statistics sampled from 28392 (28421) to 28392 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.333), width: 16 Scan time: 3.700 The best scores are: opt bits E(85289) NP_001008389 (OMIM: 604928,611507) CDGSH iron-sulf ( 135) 894 232.5 1.6e-61 NP_060934 (OMIM: 611932) CDGSH iron-sulfur domain- ( 108) 380 102.9 1.3e-22 XP_016871898 (OMIM: 611932) PREDICTED: CDGSH iron- ( 150) 378 102.5 2.4e-22 >>NP_001008389 (OMIM: 604928,611507) CDGSH iron-sulfur d (135 aa) initn: 894 init1: 894 opt: 894 Z-score: 1225.5 bits: 232.5 E(85289): 1.6e-61 Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135) 10 20 30 40 50 60 pF1KE6 MVLESVARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVLESVARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNEL 70 80 90 100 110 120 130 pF1KE6 TGDNVGPLILKKKEV ::::::::::::::: NP_001 TGDNVGPLILKKKEV 130 >>NP_060934 (OMIM: 611932) CDGSH iron-sulfur domain-cont (108 aa) initn: 340 init1: 252 opt: 380 Z-score: 526.9 bits: 102.9 E(85289): 1.3e-22 Smith-Waterman score: 380; 54.1% identity (78.0% similar) in 109 aa overlap (26-134:2-107) 10 20 30 40 50 60 pF1KE6 MVLESVARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFL :.:. . . : ::. . . . : .:::: . : NP_060 MSLTSSSSVRV-EWIAAVTIAAGTAAIGYLAYKRFY 10 20 30 70 80 90 100 110 120 pF1KE6 PKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNEL : ...: ..:::.:::.:::.:. ...::: ::.:::::::: :: :::.:.:::: NP_060 VKDHRNK-AMINLHIQKDNPKIVHAFDMEDLG-DKAVYCRCWRSKKFPFCDGAHTKHNEE 40 50 60 70 80 90 130 pF1KE6 TGDNVGPLILKKKEV :::::::::.:::: NP_060 TGDNVGPLIIKKKET 100 >>XP_016871898 (OMIM: 611932) PREDICTED: CDGSH iron-sulf (150 aa) initn: 340 init1: 252 opt: 378 Z-score: 522.1 bits: 102.5 E(85289): 2.4e-22 Smith-Waterman score: 378; 57.1% identity (79.6% similar) in 98 aa overlap (37-134:54-149) 10 20 30 40 50 60 pF1KE6 ARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQQ ::. . . . : .:::: . : : ... XP_016 HAGNRQLSSEAEANQIMQNFLLSNIAWSWVEWIAAVTIAAGTAAIGYLAYKRFYVKDHRN 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE6 KDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVG : ..:::.:::.:::.:. ...::: ::.:::::::: :: :::.:.:::: :::::: XP_016 K-AMINLHIQKDNPKIVHAFDMEDLG-DKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVG 90 100 110 120 130 140 130 pF1KE6 PLILKKKEV :::.:::: XP_016 PLIIKKKET 150 135 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:28:53 2016 done: Tue Nov 8 09:28:53 2016 Total Scan time: 3.700 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]