FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KF0065, 184 aa 1>>>pF1KF0065 184 - 184 aa - 184 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6759+/-0.000258; mu= 12.9942+/- 0.016 mean_var=99.7070+/-20.229, 0's: 0 Z-trim(122.7): 4 B-trim: 387 in 1/54 Lambda= 0.128443 statistics sampled from 41164 (41168) to 41164 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.483), width: 16 Scan time: 6.630 The best scores are: opt bits E(85289) NP_001003940 (OMIM: 606266) bcl-2-modifying factor ( 184) 1306 251.0 7.7e-67 NP_277038 (OMIM: 606266) bcl-2-modifying factor is ( 184) 1306 251.0 7.7e-67 NP_001003942 (OMIM: 606266) bcl-2-modifying factor ( 163) 925 180.4 1.3e-45 NP_001003943 (OMIM: 606266) bcl-2-modifying factor ( 129) 692 137.1 1.1e-32 >>NP_001003940 (OMIM: 606266) bcl-2-modifying factor iso (184 aa) initn: 1306 init1: 1306 opt: 1306 Z-score: 1320.9 bits: 251.0 E(85289): 7.7e-67 Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG 130 140 150 160 170 180 pF1KF0 AGPR :::: NP_001 AGPR >>NP_277038 (OMIM: 606266) bcl-2-modifying factor isofor (184 aa) initn: 1306 init1: 1306 opt: 1306 Z-score: 1320.9 bits: 251.0 E(85289): 7.7e-67 Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_277 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG 130 140 150 160 170 180 pF1KF0 AGPR :::: NP_277 AGPR >>NP_001003942 (OMIM: 606266) bcl-2-modifying factor iso (163 aa) initn: 925 init1: 925 opt: 925 Z-score: 940.1 bits: 180.4 E(85289): 1.3e-45 Smith-Waterman score: 1110; 88.6% identity (88.6% similar) in 184 aa overlap (1-184:1-163) 10 20 30 40 50 60 pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG :::::::::: ::::::::::::::::::::::::::::: NP_001 PEGQWQHQAE---------------------HQQNQNRVWWQILLFLHNLALNGEENRNG 130 140 150 pF1KF0 AGPR :::: NP_001 AGPR 160 >>NP_001003943 (OMIM: 606266) bcl-2-modifying factor iso (129 aa) initn: 698 init1: 682 opt: 692 Z-score: 708.1 bits: 137.1 E(85289): 1.1e-32 Smith-Waterman score: 692; 80.0% identity (85.4% similar) in 130 aa overlap (1-130:1-125) 10 20 30 40 50 60 pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP :::::::::::::::::::::::::::::::::::::. : : : .. : NP_001 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYAPA-----EPKSCVVADPPLPAQ 70 80 90 100 110 130 140 150 160 170 180 pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG : .:... : NP_001 PCFEWRREQERGRP 120 184 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:14:13 2016 done: Mon Nov 7 04:14:13 2016 Total Scan time: 6.630 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]