FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KF0065, 184 aa 1>>>pF1KF0065 184 - 184 aa - 184 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7334+/-0.000595; mu= 12.6111+/- 0.036 mean_var=94.3188+/-19.050, 0's: 0 Z-trim(115.5): 5 B-trim: 247 in 1/49 Lambda= 0.132061 statistics sampled from 16007 (16012) to 16007 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.492), width: 16 Scan time: 2.280 The best scores are: opt bits E(32554) CCDS10052.1 BMF gene_id:90427|Hs108|chr15 ( 184) 1306 257.6 3.1e-69 CCDS45223.1 BMF gene_id:90427|Hs108|chr15 ( 163) 925 185.0 2e-47 CCDS32196.1 BMF gene_id:90427|Hs108|chr15 ( 129) 692 140.5 3.9e-34 >>CCDS10052.1 BMF gene_id:90427|Hs108|chr15 (184 aa) initn: 1306 init1: 1306 opt: 1306 Z-score: 1356.5 bits: 257.6 E(32554): 3.1e-69 Smith-Waterman score: 1306; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG 130 140 150 160 170 180 pF1KF0 AGPR :::: CCDS10 AGPR >>CCDS45223.1 BMF gene_id:90427|Hs108|chr15 (163 aa) initn: 925 init1: 925 opt: 925 Z-score: 964.9 bits: 185.0 E(32554): 2e-47 Smith-Waterman score: 1110; 88.6% identity (88.6% similar) in 184 aa overlap (1-184:1-163) 10 20 30 40 50 60 pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG :::::::::: ::::::::::::::::::::::::::::: CCDS45 PEGQWQHQAE---------------------HQQNQNRVWWQILLFLHNLALNGEENRNG 130 140 150 pF1KF0 AGPR :::: CCDS45 AGPR 160 >>CCDS32196.1 BMF gene_id:90427|Hs108|chr15 (129 aa) initn: 698 init1: 682 opt: 692 Z-score: 726.4 bits: 140.5 E(32554): 3.9e-34 Smith-Waterman score: 692; 80.0% identity (85.4% similar) in 130 aa overlap (1-130:1-125) 10 20 30 40 50 60 pF1KF0 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KF0 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP :::::::::::::::::::::::::::::::::::::. : : : .. : CCDS32 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYAPA-----EPKSCVVADPPLPAQ 70 80 90 100 110 130 140 150 160 170 180 pF1KF0 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG : .:... : CCDS32 PCFEWRREQERGRP 120 184 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:14:12 2016 done: Mon Nov 7 04:14:12 2016 Total Scan time: 2.280 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]