Result of FASTA (ccds) for pFN21AA0413
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0413, 1237 aa
  1>>>pF1KA0413 1237 - 1237 aa - 1237 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9888+/-0.00146; mu= 7.9367+/- 0.084
 mean_var=154.5288+/-33.656, 0's: 0 Z-trim(102.3): 176  B-trim: 3 in 1/49
 Lambda= 0.103174
 statistics sampled from 6700 (6907) to 6700 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.552), E-opt: 0.2 (0.212), width:  16
 Scan time:  4.340

The best scores are:                                      opt bits E(32554)
CCDS55862.1 APAF1 gene_id:317|Hs108|chr12          (1237) 8373 1260.3       0
CCDS9069.1 APAF1 gene_id:317|Hs108|chr12           (1248) 7765 1169.8       0
CCDS55863.1 APAF1 gene_id:317|Hs108|chr12          (1194) 5646 854.4       0
CCDS9070.1 APAF1 gene_id:317|Hs108|chr12           (1205) 5038 763.9       0
CCDS9071.1 APAF1 gene_id:317|Hs108|chr12           ( 338) 1421 225.2 2.3e-58
CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1          ( 357)  368 68.4 3.6e-11


>>CCDS55862.1 APAF1 gene_id:317|Hs108|chr12               (1237 aa)
 initn: 8373 init1: 8373 opt: 8373  Z-score: 6745.5  bits: 1260.3 E(32554):    0
Smith-Waterman score: 8373; 99.9% identity (100.0% similar) in 1237 aa overlap (1-1237:1-1237)

               10        20        30        40        50        60
pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSVRTVLCEGGVPQRPVVFVTRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSVRTVLCEGGVPQRPVVFVTRKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 SIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 SFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHM
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 ASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 GHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 DPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 WQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA0 RIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQ
             1150      1160      1170      1180      1190      1200

             1210      1220      1230       
pF1KA0 TFYTNGTNLKKIHVSPDFKTYVTVDNLGIIYILQTLE
       :::::::::::::::::::::::::::::.:::::::
CCDS55 TFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE
             1210      1220      1230       

>>CCDS9069.1 APAF1 gene_id:317|Hs108|chr12                (1248 aa)
 initn: 7757 init1: 7757 opt: 7765  Z-score: 6256.4  bits: 1169.8 E(32554):    0
Smith-Waterman score: 8341; 99.0% identity (99.1% similar) in 1248 aa overlap (1-1237:1-1248)

               10        20        30        40        50        60
pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
               10        20        30        40        50        60

               70        80        90                  100         
pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS-----------VRTVLCEGGVP
       ::::::::::::::::::::::::::::::::::::::           :::::::::::
CCDS90 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP
               70        80        90       100       110       120

     110       120       130       140       150       160         
pF1KA0 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
              130       140       150       160       170       180

     170       180       190       200       210       220         
pF1KA0 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
              190       200       210       220       230       240

     230       240       250       260       270       280         
pF1KA0 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
              250       260       270       280       290       300

     290       300       310       320       330       340         
pF1KA0 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD
              310       320       330       340       350       360

     350       360       370       380       390       400         
pF1KA0 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN
              370       380       390       400       410       420

     410       420       430       440       450       460         
pF1KA0 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDC
              430       440       450       460       470       480

     470       480       490       500       510       520         
pF1KA0 MYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV
              490       500       510       520       530       540

     530       540       550       560       570       580         
pF1KA0 SENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINK
              550       560       570       580       590       600

     590       600       610       620       630       640         
pF1KA0 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV
              610       620       630       640       650       660

     650       660       670       680       690       700         
pF1KA0 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS
              670       680       690       700       710       720

     710       720       730       740       750       760         
pF1KA0 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS
              730       740       750       760       770       780

     770       780       790       800       810       820         
pF1KA0 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHH
              790       800       810       820       830       840

     830       840       850       860       870       880         
pF1KA0 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS
              850       860       870       880       890       900

     890       900       910       920       930       940         
pF1KA0 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT
              910       920       930       940       950       960

     950       960       970       980       990      1000         
pF1KA0 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS
              970       980       990      1000      1010      1020

    1010      1020      1030      1040      1050      1060         
pF1KA0 SSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD
             1030      1040      1050      1060      1070      1080

    1070      1080      1090      1100      1110      1120         
pF1KA0 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST
             1090      1100      1110      1120      1130      1140

    1130      1140      1150      1160      1170      1180         
pF1KA0 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK
             1150      1160      1170      1180      1190      1200

    1190      1200      1210      1220      1230       
pF1KA0 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGIIYILQTLE
       ::::::::::::::::::::::::::::::::::::::::.:::::::
CCDS90 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE
             1210      1220      1230      1240        

>>CCDS55863.1 APAF1 gene_id:317|Hs108|chr12               (1194 aa)
 initn: 5473 init1: 5473 opt: 5646  Z-score: 4552.1  bits: 854.4 E(32554):    0
Smith-Waterman score: 7979; 96.4% identity (96.5% similar) in 1237 aa overlap (1-1237:1-1194)

               10        20        30        40        50        60
pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSVRTVLCEGGVPQRPVVFVTRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSVRTVLCEGGVPQRPVVFVTRKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 SIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 SFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHM
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 ASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 GHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 DPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ
       ::::::::::::::::::::::::::::::::                            
CCDS55 DPQEDMEVIVKCCSWSADGARIMVAAKNKIFL----------------------------
              790       800       810                              

              850       860       870       880       890       900
pF1KA0 NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ---------------WNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET
                           820       830       840       850       

              910       920       930       940       950       960
pF1KA0 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP
       860       870       880       890       900       910       

              970       980       990      1000      1010      1020
pF1KA0 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN
       920       930       940       950       960       970       

             1030      1040      1050      1060      1070      1080
pF1KA0 WQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC
       980       990      1000      1010      1020      1030       

             1090      1100      1110      1120      1130      1140
pF1KA0 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI
      1040      1050      1060      1070      1080      1090       

             1150      1160      1170      1180      1190      1200
pF1KA0 RIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQ
      1100      1110      1120      1130      1140      1150       

             1210      1220      1230       
pF1KA0 TFYTNGTNLKKIHVSPDFKTYVTVDNLGIIYILQTLE
       :::::::::::::::::::::::::::::.:::::::
CCDS55 TFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE
      1160      1170      1180      1190    

>>CCDS9070.1 APAF1 gene_id:317|Hs108|chr12                (1205 aa)
 initn: 4857 init1: 4857 opt: 5038  Z-score: 4062.9  bits: 763.9 E(32554):    0
Smith-Waterman score: 7947; 95.6% identity (95.7% similar) in 1248 aa overlap (1-1237:1-1205)

               10        20        30        40        50        60
pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
               10        20        30        40        50        60

               70        80        90                  100         
pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS-----------VRTVLCEGGVP
       ::::::::::::::::::::::::::::::::::::::           :::::::::::
CCDS90 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP
               70        80        90       100       110       120

     110       120       130       140       150       160         
pF1KA0 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
              130       140       150       160       170       180

     170       180       190       200       210       220         
pF1KA0 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
              190       200       210       220       230       240

     230       240       250       260       270       280         
pF1KA0 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
              250       260       270       280       290       300

     290       300       310       320       330       340         
pF1KA0 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD
              310       320       330       340       350       360

     350       360       370       380       390       400         
pF1KA0 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN
              370       380       390       400       410       420

     410       420       430       440       450       460         
pF1KA0 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDC
              430       440       450       460       470       480

     470       480       490       500       510       520         
pF1KA0 MYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV
              490       500       510       520       530       540

     530       540       550       560       570       580         
pF1KA0 SENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINK
              550       560       570       580       590       600

     590       600       610       620       630       640         
pF1KA0 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV
              610       620       630       640       650       660

     650       660       670       680       690       700         
pF1KA0 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS
              670       680       690       700       710       720

     710       720       730       740       750       760         
pF1KA0 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS
              730       740       750       760       770       780

     770       780       790       800       810       820         
pF1KA0 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHH
       :::::::::::::::::::::::::::::::::::::::::::                 
CCDS90 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFL-----------------
              790       800       810       820                    

     830       840       850       860       870       880         
pF1KA0 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS
                                 ::::::::::::::::::::::::::::::::::
CCDS90 --------------------------WNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS
                                     830       840       850       

     890       900       910       920       930       940         
pF1KA0 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT
       860       870       880       890       900       910       

     950       960       970       980       990      1000         
pF1KA0 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS
       920       930       940       950       960       970       

    1010      1020      1030      1040      1050      1060         
pF1KA0 SSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 SSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD
       980       990      1000      1010      1020      1030       

    1070      1080      1090      1100      1110      1120         
pF1KA0 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST
      1040      1050      1060      1070      1080      1090       

    1130      1140      1150      1160      1170      1180         
pF1KA0 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK
      1100      1110      1120      1130      1140      1150       

    1190      1200      1210      1220      1230       
pF1KA0 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGIIYILQTLE
       ::::::::::::::::::::::::::::::::::::::::.:::::::
CCDS90 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE
      1160      1170      1180      1190      1200     

>>CCDS9071.1 APAF1 gene_id:317|Hs108|chr12                (338 aa)
 initn: 1406 init1: 1406 opt: 1421  Z-score: 1161.4  bits: 225.2 E(32554): 2.3e-58
Smith-Waterman score: 1997; 92.0% identity (93.8% similar) in 338 aa overlap (1-327:1-335)

               10        20        30        40        50        60
pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI
               10        20        30        40        50        60

               70        80        90                  100         
pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS-----------VRTVLCEGGVP
       ::::::::::::::::::::::::::::::::::::::           :::::::::::
CCDS90 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP
               70        80        90       100       110       120

     110       120       130       140       150       160         
pF1KA0 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG
              130       140       150       160       170       180

     170       180       190       200       210       220         
pF1KA0 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL
              190       200       210       220       230       240

     230       240       250       260       270       280         
pF1KA0 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN
              250       260       270       280       290       300

     290       300       310       320       330       340         
pF1KA0 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD
       ::::::::::::::::::   .:     ..: :. ..:                      
CCDS90 MKKADLPEQAHSIIKECK---VVERCHWGILTDLLHKWNQS                   
              310          320       330                           

     350       360       370       380       390       400         
pF1KA0 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN

>>CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1               (357 aa)
 initn: 280 init1: 125 opt: 368  Z-score: 314.0  bits: 68.4 E(32554): 3.6e-11
Smith-Waterman score: 368; 27.4% identity (60.7% similar) in 270 aa overlap (582-849:89-347)

             560       570       580       590       600       610 
pF1KA0 IVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHAC
                                     : : :    .  : . :  . :. ::..  
CCDS34 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATL--KGHSGAVMELH
       60        70        80        90       100         110      

             620       630       640       650        660       670
pF1KA0 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST-DDRFIATCSVDKKV
       .. ::. . : ..:::. :. .::::.. ..:.: . :  :  .    ... : : :  :
CCDS34 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV
        120       130       140       150       160       170      

              680       690       700       710       720       730
pF1KA0 KIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFG
       :.:.      ..:. ... ::    :...: ...  .:. :  .:.::: :..   :: :
CCDS34 KLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQII--SGGIDNDIKVWDLRQNKLTYTMRG
        180       190        200         210       220       230   

              740       750       760       770       780       790
pF1KA0 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV
       :..::.   .: . . : : . :.:...::.     ..   :: :  :... ....   .
CCDS34 HADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERC-VKIFQGNVHNFEKNL---L
           240       250       260       270        280            

              800        810       820       830       840         
pF1KA0 KCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALS
       .: ::: ::..: ... .. ....:  .  .: ..  :: ..:.   : :.. . . : :
CCDS34 RC-SWSPDGSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIIISASS
     290        300       310       320        330       340       

     850       860       870       880       890       900         
pF1KA0 QYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAV
                                                                   
CCDS34 DKRLYMGEIQ                                                  
       350                                                         




1237 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:37:48 2016 done: Mon Nov  7 04:37:48 2016
 Total Scan time:  4.340 Total Display time:  0.280

Function used was FASTA [36.3.4 Apr, 2011]
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