FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KA0413, 1237 aa 1>>>pF1KA0413 1237 - 1237 aa - 1237 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.9888+/-0.00146; mu= 7.9367+/- 0.084 mean_var=154.5288+/-33.656, 0's: 0 Z-trim(102.3): 176 B-trim: 3 in 1/49 Lambda= 0.103174 statistics sampled from 6700 (6907) to 6700 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.552), E-opt: 0.2 (0.212), width: 16 Scan time: 4.340 The best scores are: opt bits E(32554) CCDS55862.1 APAF1 gene_id:317|Hs108|chr12 (1237) 8373 1260.3 0 CCDS9069.1 APAF1 gene_id:317|Hs108|chr12 (1248) 7765 1169.8 0 CCDS55863.1 APAF1 gene_id:317|Hs108|chr12 (1194) 5646 854.4 0 CCDS9070.1 APAF1 gene_id:317|Hs108|chr12 (1205) 5038 763.9 0 CCDS9071.1 APAF1 gene_id:317|Hs108|chr12 ( 338) 1421 225.2 2.3e-58 CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1 ( 357) 368 68.4 3.6e-11 >>CCDS55862.1 APAF1 gene_id:317|Hs108|chr12 (1237 aa) initn: 8373 init1: 8373 opt: 8373 Z-score: 6745.5 bits: 1260.3 E(32554): 0 Smith-Waterman score: 8373; 99.9% identity (100.0% similar) in 1237 aa overlap (1-1237:1-1237) 10 20 30 40 50 60 pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSVRTVLCEGGVPQRPVVFVTRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSVRTVLCEGGVPQRPVVFVTRKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KA0 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KA0 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KA0 KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KA0 SIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 SIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KA0 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KA0 SFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 SFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHM 430 440 450 460 470 480 490 500 510 520 530 540 pF1KA0 ASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLN 490 500 510 520 530 540 550 560 570 580 590 600 pF1KA0 GHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 GHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVV 550 560 570 580 590 600 610 620 630 640 650 660 pF1KA0 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 610 620 630 640 650 660 670 680 690 700 710 720 pF1KA0 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 670 680 690 700 710 720 730 740 750 760 770 780 pF1KA0 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE 730 740 750 760 770 780 790 800 810 820 830 840 pF1KA0 DPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 DPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ 790 800 810 820 830 840 850 860 870 880 890 900 pF1KA0 NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 850 860 870 880 890 900 910 920 930 940 950 960 pF1KA0 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KA0 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KA0 WQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 WQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KA0 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KA0 RIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQ 1150 1160 1170 1180 1190 1200 1210 1220 1230 pF1KA0 TFYTNGTNLKKIHVSPDFKTYVTVDNLGIIYILQTLE :::::::::::::::::::::::::::::.::::::: CCDS55 TFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE 1210 1220 1230 >>CCDS9069.1 APAF1 gene_id:317|Hs108|chr12 (1248 aa) initn: 7757 init1: 7757 opt: 7765 Z-score: 6256.4 bits: 1169.8 E(32554): 0 Smith-Waterman score: 8341; 99.0% identity (99.1% similar) in 1248 aa overlap (1-1237:1-1248) 10 20 30 40 50 60 pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 10 20 30 40 50 60 70 80 90 100 pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS-----------VRTVLCEGGVP :::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS90 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 70 80 90 100 110 120 110 120 130 140 150 160 pF1KA0 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 130 140 150 160 170 180 170 180 190 200 210 220 pF1KA0 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 190 200 210 220 230 240 230 240 250 260 270 280 pF1KA0 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 250 260 270 280 290 300 290 300 310 320 330 340 pF1KA0 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD 310 320 330 340 350 360 350 360 370 380 390 400 pF1KA0 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN 370 380 390 400 410 420 410 420 430 440 450 460 pF1KA0 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDC 430 440 450 460 470 480 470 480 490 500 510 520 pF1KA0 MYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 MYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV 490 500 510 520 530 540 530 540 550 560 570 580 pF1KA0 SENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 SENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINK 550 560 570 580 590 600 590 600 610 620 630 640 pF1KA0 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV 610 620 630 640 650 660 650 660 670 680 690 700 pF1KA0 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS 670 680 690 700 710 720 710 720 730 740 750 760 pF1KA0 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS 730 740 750 760 770 780 770 780 790 800 810 820 pF1KA0 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHH 790 800 810 820 830 840 830 840 850 860 870 880 pF1KA0 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 850 860 870 880 890 900 890 900 910 920 930 940 pF1KA0 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT 910 920 930 940 950 960 950 960 970 980 990 1000 pF1KA0 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS 970 980 990 1000 1010 1020 1010 1020 1030 1040 1050 1060 pF1KA0 SSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 SSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD 1030 1040 1050 1060 1070 1080 1070 1080 1090 1100 1110 1120 pF1KA0 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST 1090 1100 1110 1120 1130 1140 1130 1140 1150 1160 1170 1180 pF1KA0 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK 1150 1160 1170 1180 1190 1200 1190 1200 1210 1220 1230 pF1KA0 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGIIYILQTLE ::::::::::::::::::::::::::::::::::::::::.::::::: CCDS90 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE 1210 1220 1230 1240 >>CCDS55863.1 APAF1 gene_id:317|Hs108|chr12 (1194 aa) initn: 5473 init1: 5473 opt: 5646 Z-score: 4552.1 bits: 854.4 E(32554): 0 Smith-Waterman score: 7979; 96.4% identity (96.5% similar) in 1237 aa overlap (1-1237:1-1194) 10 20 30 40 50 60 pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSVRTVLCEGGVPQRPVVFVTRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSVRTVLCEGGVPQRPVVFVTRKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KA0 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KA0 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KA0 KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KA0 SIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 SIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KA0 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KA0 SFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 SFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHM 430 440 450 460 470 480 490 500 510 520 530 540 pF1KA0 ASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLN 490 500 510 520 530 540 550 560 570 580 590 600 pF1KA0 GHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 GHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVV 550 560 570 580 590 600 610 620 630 640 650 660 pF1KA0 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 610 620 630 640 650 660 670 680 690 700 710 720 pF1KA0 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 670 680 690 700 710 720 730 740 750 760 770 780 pF1KA0 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE 730 740 750 760 770 780 790 800 810 820 830 840 pF1KA0 DPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ :::::::::::::::::::::::::::::::: CCDS55 DPQEDMEVIVKCCSWSADGARIMVAAKNKIFL---------------------------- 790 800 810 850 860 870 880 890 900 pF1KA0 NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET ::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ---------------WNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 820 830 840 850 910 920 930 940 950 960 pF1KA0 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSP 860 870 880 890 900 910 970 980 990 1000 1010 1020 pF1KA0 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 920 930 940 950 960 970 1030 1040 1050 1060 1070 1080 pF1KA0 WQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 WQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC 980 990 1000 1010 1020 1030 1090 1100 1110 1120 1130 1140 pF1KA0 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 DISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI 1040 1050 1060 1070 1080 1090 1150 1160 1170 1180 1190 1200 pF1KA0 RIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQ 1100 1110 1120 1130 1140 1150 1210 1220 1230 pF1KA0 TFYTNGTNLKKIHVSPDFKTYVTVDNLGIIYILQTLE :::::::::::::::::::::::::::::.::::::: CCDS55 TFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE 1160 1170 1180 1190 >>CCDS9070.1 APAF1 gene_id:317|Hs108|chr12 (1205 aa) initn: 4857 init1: 4857 opt: 5038 Z-score: 4062.9 bits: 763.9 E(32554): 0 Smith-Waterman score: 7947; 95.6% identity (95.7% similar) in 1248 aa overlap (1-1237:1-1205) 10 20 30 40 50 60 pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 10 20 30 40 50 60 70 80 90 100 pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS-----------VRTVLCEGGVP :::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS90 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 70 80 90 100 110 120 110 120 130 140 150 160 pF1KA0 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 130 140 150 160 170 180 170 180 190 200 210 220 pF1KA0 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 190 200 210 220 230 240 230 240 250 260 270 280 pF1KA0 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 250 260 270 280 290 300 290 300 310 320 330 340 pF1KA0 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD 310 320 330 340 350 360 350 360 370 380 390 400 pF1KA0 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN 370 380 390 400 410 420 410 420 430 440 450 460 pF1KA0 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 KSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDC 430 440 450 460 470 480 470 480 490 500 510 520 pF1KA0 MYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 MYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAV 490 500 510 520 530 540 530 540 550 560 570 580 pF1KA0 SENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 SENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINK 550 560 570 580 590 600 590 600 610 620 630 640 pF1KA0 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV 610 620 630 640 650 660 650 660 670 680 690 700 pF1KA0 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS 670 680 690 700 710 720 710 720 730 740 750 760 pF1KA0 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS 730 740 750 760 770 780 770 780 790 800 810 820 pF1KA0 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHH ::::::::::::::::::::::::::::::::::::::::::: CCDS90 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFL----------------- 790 800 810 820 830 840 850 860 870 880 pF1KA0 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS :::::::::::::::::::::::::::::::::: CCDS90 --------------------------WNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 830 840 850 890 900 910 920 930 940 pF1KA0 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT 860 870 880 890 900 910 950 960 970 980 990 1000 pF1KA0 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLIS 920 930 940 950 960 970 1010 1020 1030 1040 1050 1060 pF1KA0 SSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 SSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD 980 990 1000 1010 1020 1030 1070 1080 1090 1100 1110 1120 pF1KA0 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST 1040 1050 1060 1070 1080 1090 1130 1140 1150 1160 1170 1180 pF1KA0 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK 1100 1110 1120 1130 1140 1150 1190 1200 1210 1220 1230 pF1KA0 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGIIYILQTLE ::::::::::::::::::::::::::::::::::::::::.::::::: CCDS90 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE 1160 1170 1180 1190 1200 >>CCDS9071.1 APAF1 gene_id:317|Hs108|chr12 (338 aa) initn: 1406 init1: 1406 opt: 1421 Z-score: 1161.4 bits: 225.2 E(32554): 2.3e-58 Smith-Waterman score: 1997; 92.0% identity (93.8% similar) in 338 aa overlap (1-327:1-335) 10 20 30 40 50 60 pF1KA0 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMI 10 20 30 40 50 60 70 80 90 100 pF1KA0 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSS-----------VRTVLCEGGVP :::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS90 LKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVP 70 80 90 100 110 120 110 120 130 140 150 160 pF1KA0 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG 130 140 150 160 170 180 170 180 190 200 210 220 pF1KA0 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 GVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 190 200 210 220 230 240 230 240 250 260 270 280 pF1KA0 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS90 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN 250 260 270 280 290 300 290 300 310 320 330 340 pF1KA0 MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYD :::::::::::::::::: .: ..: :. ..: CCDS90 MKKADLPEQAHSIIKECK---VVERCHWGILTDLLHKWNQS 310 320 330 350 360 370 380 390 400 pF1KA0 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN >>CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1 (357 aa) initn: 280 init1: 125 opt: 368 Z-score: 314.0 bits: 68.4 E(32554): 3.6e-11 Smith-Waterman score: 368; 27.4% identity (60.7% similar) in 270 aa overlap (582-849:89-347) 560 570 580 590 600 610 pF1KA0 IVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHAC : : : . : . : . :. ::.. CCDS34 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATL--KGHSGAVMELH 60 70 80 90 100 110 620 630 640 650 660 670 pF1KA0 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST-DDRFIATCSVDKKV .. ::. . : ..:::. :. .::::.. ..:.: . : : . ... : : : : CCDS34 YNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV 120 130 140 150 160 170 680 690 700 710 720 730 pF1KA0 KIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFG :.:. ..:. ... :: :...: ... .:. : .:.::: :.. :: : CCDS34 KLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQII--SGGIDNDIKVWDLRQNKLTYTMRG 180 190 200 210 220 230 740 750 760 770 780 790 pF1KA0 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV :..::. .: . . : : . :.:...::. .. :: : :... .... . CCDS34 HADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERC-VKIFQGNVHNFEKNL---L 240 250 260 270 280 800 810 820 830 840 pF1KA0 KCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALS .: ::: ::..: ... .. ....: . .: .. :: ..:. : :.. . . : : CCDS34 RC-SWSPDGSKIAAGSADRFVYVWDTTSRRILYKL-PGHAGSINEVAFHPDEPIIISASS 290 300 310 320 330 340 850 860 870 880 890 900 pF1KA0 QYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAV CCDS34 DKRLYMGEIQ 350 1237 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:37:48 2016 done: Mon Nov 7 04:37:48 2016 Total Scan time: 4.340 Total Display time: 0.280 Function used was FASTA [36.3.4 Apr, 2011]