FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB4605, 472 aa 1>>>pF1KB4605 472 - 472 aa - 472 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2801+/-0.000374; mu= 17.7645+/- 0.023 mean_var=63.5502+/-12.675, 0's: 0 Z-trim(111.9): 42 B-trim: 116 in 1/50 Lambda= 0.160885 statistics sampled from 20575 (20616) to 20575 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.242), width: 16 Scan time: 8.400 The best scores are: opt bits E(85289) NP_001406 (OMIM: 300161,300987) eukaryotic transla ( 472) 3080 723.9 2.4e-208 XP_016862469 (OMIM: 607695) PREDICTED: selenocyste ( 491) 278 73.5 1.5e-12 XP_016862466 (OMIM: 607695) PREDICTED: selenocyste ( 553) 278 73.5 1.6e-12 XP_016862465 (OMIM: 607695) PREDICTED: selenocyste ( 571) 278 73.5 1.7e-12 XP_016862464 (OMIM: 607695) PREDICTED: selenocyste ( 575) 278 73.5 1.7e-12 NP_068756 (OMIM: 607695) selenocysteine-specific e ( 596) 278 73.6 1.7e-12 XP_005247753 (OMIM: 607695) PREDICTED: selenocyste ( 541) 243 65.4 4.4e-10 XP_016879108 (OMIM: 602389,610678) PREDICTED: elon ( 455) 223 60.7 9.6e-09 NP_003312 (OMIM: 602389,610678) elongation factor ( 455) 223 60.7 9.6e-09 XP_011544230 (OMIM: 602389,610678) PREDICTED: elon ( 427) 207 57.0 1.2e-07 XP_016862468 (OMIM: 607695) PREDICTED: selenocyste ( 525) 173 49.2 3.4e-05 XP_016862467 (OMIM: 607695) PREDICTED: selenocyste ( 536) 173 49.2 3.4e-05 NP_060564 (OMIM: 300418) eukaryotic peptide chain ( 628) 173 49.2 3.9e-05 NP_001123479 (OMIM: 139259) eukaryotic peptide cha ( 499) 165 47.3 0.00012 NP_001123478 (OMIM: 139259) eukaryotic peptide cha ( 636) 165 47.3 0.00014 NP_002085 (OMIM: 139259) eukaryotic peptide chain ( 637) 165 47.3 0.00014 NP_001949 (OMIM: 602959,616393,616409) elongation ( 463) 158 45.6 0.00034 NP_001393 (OMIM: 130590) elongation factor 1-alpha ( 462) 151 44.0 0.001 XP_011533816 (OMIM: 130590) PREDICTED: elongation ( 462) 151 44.0 0.001 >>NP_001406 (OMIM: 300161,300987) eukaryotic translation (472 aa) initn: 3080 init1: 3080 opt: 3080 Z-score: 3861.6 bits: 723.9 E(85289): 2.4e-208 Smith-Waterman score: 3080; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472) 10 20 30 40 50 60 pF1KB4 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB4 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB4 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB4 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB4 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB4 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB4 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV 370 380 390 400 410 420 430 440 450 460 470 pF1KB4 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD 430 440 450 460 470 >>XP_016862469 (OMIM: 607695) PREDICTED: selenocysteine- (491 aa) initn: 243 init1: 109 opt: 278 Z-score: 346.5 bits: 73.5 E(85289): 1.5e-12 Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297) 10 20 30 40 50 60 pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT :....:.:..::. ::.....:.: . : XP_016 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST 10 20 30 70 80 90 100 110 120 pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN . : .. ::.::. ::.. : : : :: : : :: . . XP_016 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP 40 50 60 70 80 130 140 150 160 170 180 pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK . . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: : XP_016 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK 90 100 110 120 130 140 190 200 210 220 pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK ...: :::::. :.. . ... .: :. . ::::::..:. XP_016 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP 150 160 170 180 190 230 240 250 260 270 280 pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK .: . : ....: .: :: : : :. : : : .: : :.::.: .. XP_016 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS 200 210 220 230 240 250 290 300 310 320 330 340 pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC .:. .:. :.. . .:. :. : . : : .:. :..:: : XP_016 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL 260 270 280 290 350 360 370 380 390 400 pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI XP_016 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF 300 310 320 330 340 350 >>XP_016862466 (OMIM: 607695) PREDICTED: selenocysteine- (553 aa) initn: 243 init1: 109 opt: 278 Z-score: 345.7 bits: 73.5 E(85289): 1.6e-12 Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297) 10 20 30 40 50 60 pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT :....:.:..::. ::.....:.: . : XP_016 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST 10 20 30 70 80 90 100 110 120 pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN . : .. ::.::. ::.. : : : :: : : :: . . XP_016 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP 40 50 60 70 80 130 140 150 160 170 180 pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK . . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: : XP_016 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK 90 100 110 120 130 140 190 200 210 220 pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK ...: :::::. :.. . ... .: :. . ::::::..:. XP_016 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP 150 160 170 180 190 230 240 250 260 270 280 pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK .: . : ....: .: :: : : :. : : : .: : :.::.: .. XP_016 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS 200 210 220 230 240 250 290 300 310 320 330 340 pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC .:. .:. :.. . .:. :. : . : : .:. :..:: : XP_016 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL 260 270 280 290 350 360 370 380 390 400 pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI XP_016 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF 300 310 320 330 340 350 >>XP_016862465 (OMIM: 607695) PREDICTED: selenocysteine- (571 aa) initn: 243 init1: 109 opt: 278 Z-score: 345.5 bits: 73.5 E(85289): 1.7e-12 Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297) 10 20 30 40 50 60 pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT :....:.:..::. ::.....:.: . : XP_016 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST 10 20 30 70 80 90 100 110 120 pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN . : .. ::.::. ::.. : : : :: : : :: . . XP_016 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP 40 50 60 70 80 130 140 150 160 170 180 pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK . . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: : XP_016 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK 90 100 110 120 130 140 190 200 210 220 pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK ...: :::::. :.. . ... .: :. . ::::::..:. XP_016 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP 150 160 170 180 190 230 240 250 260 270 280 pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK .: . : ....: .: :: : : :. : : : .: : :.::.: .. XP_016 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS 200 210 220 230 240 250 290 300 310 320 330 340 pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC .:. .:. :.. . .:. :. : . : : .:. :..:: : XP_016 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL 260 270 280 290 350 360 370 380 390 400 pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI XP_016 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF 300 310 320 330 340 350 >>XP_016862464 (OMIM: 607695) PREDICTED: selenocysteine- (575 aa) initn: 243 init1: 109 opt: 278 Z-score: 345.4 bits: 73.5 E(85289): 1.7e-12 Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297) 10 20 30 40 50 60 pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT :....:.:..::. ::.....:.: . : XP_016 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST 10 20 30 70 80 90 100 110 120 pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN . : .. ::.::. ::.. : : : :: : : :: . . XP_016 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP 40 50 60 70 80 130 140 150 160 170 180 pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK . . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: : XP_016 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK 90 100 110 120 130 140 190 200 210 220 pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK ...: :::::. :.. . ... .: :. . ::::::..:. XP_016 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP 150 160 170 180 190 230 240 250 260 270 280 pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK .: . : ....: .: :: : : :. : : : .: : :.::.: .. XP_016 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS 200 210 220 230 240 250 290 300 310 320 330 340 pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC .:. .:. :.. . .:. :. : . : : .:. :..:: : XP_016 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL 260 270 280 290 350 360 370 380 390 400 pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI XP_016 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF 300 310 320 330 340 350 >>NP_068756 (OMIM: 607695) selenocysteine-specific elong (596 aa) initn: 273 init1: 109 opt: 278 Z-score: 345.2 bits: 73.6 E(85289): 1.7e-12 Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297) 10 20 30 40 50 60 pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT :....:.:..::. ::.....:.: . : NP_068 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST 10 20 30 70 80 90 100 110 120 pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN . : .. ::.::. ::.. : : : :: : : :: . . NP_068 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP 40 50 60 70 80 130 140 150 160 170 180 pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK . . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: : NP_068 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK 90 100 110 120 130 140 190 200 210 220 pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK ...: :::::. :.. . ... .: :. . ::::::..:. NP_068 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP 150 160 170 180 190 230 240 250 260 270 280 pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK .: . : ....: .: :: : : :. : : : .: : :.::.: .. NP_068 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS 200 210 220 230 240 250 290 300 310 320 330 340 pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC .:. .:. :.. . .:. :. : . : : .:. :..:: : NP_068 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL 260 270 280 290 350 360 370 380 390 400 pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI NP_068 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF 300 310 320 330 340 350 >>XP_005247753 (OMIM: 607695) PREDICTED: selenocysteine- (541 aa) initn: 273 init1: 109 opt: 243 Z-score: 301.9 bits: 65.4 E(85289): 4.4e-10 Smith-Waterman score: 276; 30.8% identity (62.1% similar) in 198 aa overlap (38-227:4-187) 10 20 30 40 50 60 pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT :....:.:..::. ::.....:.: . : XP_005 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST 10 20 30 70 80 90 100 110 120 pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN . : .. ::.::. ::.. .. : : :: : : :: . . XP_005 AAFDKQPQSRERGITLDLGFSCFSV--------PLPARLRS---SLP-EFQAAPEAEPEP 40 50 60 70 80 130 140 150 160 170 180 pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK . . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: : XP_005 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK 90 100 110 120 130 140 190 200 210 220 230 pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQLKYNIEVVCEYI ...: :::::. :.. . ... .: :. . ::::::..:. XP_005 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP 150 160 170 180 190 240 250 260 270 280 290 pF1KB4 VKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPG XP_005 QGIPELIEVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHA 200 210 220 230 240 250 >>XP_016879108 (OMIM: 602389,610678) PREDICTED: elongati (455 aa) initn: 242 init1: 90 opt: 223 Z-score: 278.0 bits: 60.7 E(85289): 9.6e-09 Smith-Waterman score: 319; 27.1% identity (53.4% similar) in 358 aa overlap (42-385:61-369) 20 30 40 50 60 70 pF1KB4 QPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKN .:.:::::: :::.:.. ::. XP_016 LRLLKAPALPLLCRGLAVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAIT--------- 40 50 60 70 80 80 90 100 110 120 130 pF1KB4 ELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVS .: . : :. : :. : . :. . ... :. : .:: . XP_016 ----KILAEGGGAKFKKYEEID-NAPEERARGITINAAHVEYSTA----------ARHYA 90 100 110 120 140 150 160 170 180 190 pF1KB4 FVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNK .::::: . .:..:.: .:. .:..:.:.. :.::: ::: . . ..:... :: XP_016 HTDCPGHADYVKNMITGTAPLDGCILVVAANDG-PMPQTREHLLLARQIGVEHVVVYVNK 130 140 150 160 170 180 200 210 220 230 pF1KB4 IDLVKESQAKEQYE-QILAFVQ--GTVAEGAPIIPISAQ-----------LKYNIEVVCE : :..:. : : .: .. : .: .:.: :: :: ... . . XP_016 ADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEGRDPELGLK-SVQKLLD 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB4 YIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVR . :::: ::. .: :. ... . :: .: :. :.. .:.:: :.: :. XP_016 AVDTYIPVPARDLE-KPFLLPVEAV-YSVPG------RGTVVTGTLERGILKKGDECELL 250 260 270 280 290 300 310 320 330 340 350 pF1KB4 PGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQV :. : : . .... :..:. : : .:. .. : : : : : XP_016 ---------GH--SKNIRTVVTGIEMFHKSLERAEAGDNLGALVR---GLKREDLRRGLV 300 310 320 330 340 360 370 380 390 400 410 pF1KB4 LGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRV . :.. . ..: . ..: . : : XP_016 MVKPGSI-KPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPEKELA 350 360 370 380 390 400 >>NP_003312 (OMIM: 602389,610678) elongation factor Tu, (455 aa) initn: 242 init1: 90 opt: 223 Z-score: 278.0 bits: 60.7 E(85289): 9.6e-09 Smith-Waterman score: 319; 27.1% identity (53.4% similar) in 358 aa overlap (42-385:61-369) 20 30 40 50 60 70 pF1KB4 QPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKN .:.:::::: :::.:.. ::. NP_003 LRLLKAPALPLLCRGLAVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAIT--------- 40 50 60 70 80 80 90 100 110 120 130 pF1KB4 ELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVS .: . : :. : :. : . :. . ... :. : .:: . NP_003 ----KILAEGGGAKFKKYEEID-NAPEERARGITINAAHVEYSTA----------ARHYA 90 100 110 120 140 150 160 170 180 190 pF1KB4 FVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNK .::::: . .:..:.: .:. .:..:.:.. :.::: ::: . . ..:... :: NP_003 HTDCPGHADYVKNMITGTAPLDGCILVVAANDG-PMPQTREHLLLARQIGVEHVVVYVNK 130 140 150 160 170 180 200 210 220 230 pF1KB4 IDLVKESQAKEQYE-QILAFVQ--GTVAEGAPIIPISAQ-----------LKYNIEVVCE : :..:. : : .: .. : .: .:.: :: :: ... . . NP_003 ADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEGRDPELGLK-SVQKLLD 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB4 YIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVR . :::: ::. .: :. ... . :: .: :. :.. .:.:: :.: :. NP_003 AVDTYIPVPARDLE-KPFLLPVEAV-YSVPG------RGTVVTGTLERGILKKGDECELL 250 260 270 280 290 300 310 320 330 340 350 pF1KB4 PGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQV :. : : . .... :..:. : : .:. .. : : : : : NP_003 ---------GH--SKNIRTVVTGIEMFHKSLERAEAGDNLGALVR---GLKREDLRRGLV 300 310 320 330 340 360 370 380 390 400 410 pF1KB4 LGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRV . :.. . ..: . ..: . : : NP_003 MVKPGSI-KPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPEKELA 350 360 370 380 390 400 >>XP_011544230 (OMIM: 602389,610678) PREDICTED: elongati (427 aa) initn: 242 init1: 90 opt: 207 Z-score: 258.3 bits: 57.0 E(85289): 1.2e-07 Smith-Waterman score: 269; 28.0% identity (54.3% similar) in 289 aa overlap (42-301:61-321) 20 30 40 50 60 70 pF1KB4 QPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKN .:.:::::: :::.:.. ::. XP_011 LRLLKAPALPLLCRGLAVEAKKTYVRDKPHVNVGTIGHVDHGKTTLTAAIT--------- 40 50 60 70 80 80 90 100 110 120 130 pF1KB4 ELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVS .: . : :. : :. : . :. . ... :. : .:: . XP_011 ----KILAEGGGAKFKKYEEID-NAPEERARGITINAAHVEYSTA----------ARHYA 90 100 110 120 140 150 160 170 180 190 pF1KB4 FVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNK .::::: . .:..:.: .:. .:..:.:.. :.::: ::: . . ..:... :: XP_011 HTDCPGHADYVKNMITGTAPLDGCILVVAANDG-PMPQTREHLLLARQIGVEHVVVYVNK 130 140 150 160 170 180 200 210 220 230 pF1KB4 IDLVKESQAKEQYE-QILAFVQ--GTVAEGAPIIPISAQ-----------LKYNIEVVCE : :..:. : : .: .. : .: .:.: :: :: ... . . XP_011 ADAVQDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCALEGRDPELGLK-SVQKLLD 190 200 210 220 230 240 240 250 260 270 280 pF1KB4 YIVKKIPVPPRDFTSEPRLIVIRS-FDVNKPGCEVD-------DLKGGVAG---GSILKG . :::: ::. .: :. ... ..: : : .:. . :: :....: XP_011 AVDTYIPVPARDLE-KPFLLPVEAVYSVPGRGTVVTGIEMFHKSLERAEAGDNLGALVRG 250 260 270 280 290 300 290 300 310 320 330 340 pF1KB4 V----LKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTK . :. : . :.:: . XP_011 LKREDLRRGL-VMVKPGSIKPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMAC 310 320 330 340 350 360 472 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 14:28:45 2016 done: Mon Nov 7 14:28:46 2016 Total Scan time: 8.400 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]