FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB4605, 472 aa 1>>>pF1KB4605 472 - 472 aa - 472 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1975+/-0.000895; mu= 18.4447+/- 0.054 mean_var=63.7694+/-12.608, 0's: 0 Z-trim(105.1): 24 B-trim: 0 in 0/51 Lambda= 0.160608 statistics sampled from 8222 (8236) to 8222 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.253), width: 16 Scan time: 2.330 The best scores are: opt bits E(32554) CCDS14210.1 EIF2S3 gene_id:1968|Hs108|chrX ( 472) 3080 722.6 2.2e-208 CCDS33849.1 EEFSEC gene_id:60678|Hs108|chr3 ( 596) 278 73.4 7.5e-13 >>CCDS14210.1 EIF2S3 gene_id:1968|Hs108|chrX (472 aa) initn: 3080 init1: 3080 opt: 3080 Z-score: 3854.5 bits: 722.6 E(32554): 2.2e-208 Smith-Waterman score: 3080; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472) 10 20 30 40 50 60 pF1KB4 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MAGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB4 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 ISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB4 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 KGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB4 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 KLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB4 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 KKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB4 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 VSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB4 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 VGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV 370 380 390 400 410 420 430 440 450 460 470 pF1KB4 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTVDDD 430 440 450 460 470 >>CCDS33849.1 EEFSEC gene_id:60678|Hs108|chr3 (596 aa) initn: 273 init1: 109 opt: 278 Z-score: 344.2 bits: 73.4 E(32554): 7.5e-13 Smith-Waterman score: 337; 28.3% identity (55.0% similar) in 329 aa overlap (38-347:4-297) 10 20 30 40 50 60 pF1KB4 VTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAISGV-HT :....:.:..::. ::.....:.: . : CCDS33 MAGRRVNVNVGVLGHIDSGKTALARALSTTAST 10 20 30 70 80 90 100 110 120 pF1KB4 VRFKNE---LERNITIKLGYANAKIYKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGN . : .. ::.::. ::.. : : : :: : : :: . . CCDS33 AAFDKQPQSRERGITLDLGFSCF--------SVPLPARLRS---SLP-EFQAAPEAEPEP 40 50 60 70 80 130 140 150 160 170 180 pF1KB4 FKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLK . . .:..:::::: :. :...:: ..: .:.: ... : :..: :. .: : CCDS33 GEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK 90 100 110 120 130 140 190 200 210 220 pF1KB4 HILILQNKIDLVKESQAKEQYEQILAFVQGTVAE----GAPIIPISAQ----------LK ...: :::::. :.. . ... .: :. . ::::::..:. CCDS33 LVVVL-NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAP 150 160 170 180 190 230 240 250 260 270 280 pF1KB4 YNIEVVCEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLK .: . : ....: .: :: : : :. : : : .: : :.::.: .. CCDS33 QGIPELIELLTSQISIPTRD-PSGPFLM---SVD----HCFSIKGQGTVMTGTILSGSIS 200 210 220 230 240 250 290 300 310 320 330 340 pF1KB4 VGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTLC .:. .:. :.. . .:. :. : . : : .:. :..:: : CCDS33 LGDSVEI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLL 260 270 280 290 350 360 370 380 390 400 pF1KB4 RADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNI CCDS33 ERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNF 300 310 320 330 340 350 472 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 14:28:44 2016 done: Mon Nov 7 14:28:45 2016 Total Scan time: 2.330 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]