FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0189, 221 aa
  1>>>pF1KE0189 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6364+/-0.00064; mu= 13.0334+/- 0.039
 mean_var=79.3142+/-15.257, 0's: 0 Z-trim(112.3): 5  B-trim: 0 in 0/52
 Lambda= 0.144012
 statistics sampled from 13041 (13044) to 13041 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.401), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS8723.1 FAM60A gene_id:58516|Hs108|chr12        ( 221) 1538 328.2 2.5e-90


>>CCDS8723.1 FAM60A gene_id:58516|Hs108|chr12             (221 aa)
 initn: 1538 init1: 1538 opt: 1538  Z-score: 1735.3  bits: 328.2 E(32554): 2.5e-90
Smith-Waterman score: 1538; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE0 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 DAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKG
              130       140       150       160       170       180

              190       200       210       220 
pF1KE0 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
       :::::::::::::::::::::::::::::::::::::::::
CCDS87 RFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPISTQEW
              190       200       210       220 




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 14:29:34 2016 done: Mon Nov  7 14:29:35 2016
 Total Scan time:  2.260 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]