Result of FASTA (omim) for
pFN21AB9980
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9980, 708 aa
1>>>pF1KB9980 708 - 708 aa - 708 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2430+/-0.000533; mu= 12.0205+/- 0.033
mean_var=162.1644+/-31.973, 0's: 0 Z-trim(112.7): 13 B-trim: 0 in 0/52
Lambda= 0.100716
statistics sampled from 21686 (21696) to 21686 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.254), width: 16
Scan time: 11.800
The best scores are: opt bits E(85289)
XP_016873261 (OMIM: 600814,604391) PREDICTED: doub ( 708) 4644 687.9 3.6e-197
NP_005582 (OMIM: 600814,604391) double-strand brea ( 708) 4644 687.9 3.6e-197
XP_011541139 (OMIM: 600814,604391) PREDICTED: doub ( 708) 4644 687.9 3.6e-197
NP_001317276 (OMIM: 600814,604391) double-strand b ( 707) 4627 685.4 2e-196
XP_006718905 (OMIM: 600814,604391) PREDICTED: doub ( 707) 4627 685.4 2e-196
NP_005581 (OMIM: 600814,604391) double-strand brea ( 680) 3950 587.0 8e-167
XP_005274065 (OMIM: 600814,604391) PREDICTED: doub ( 552) 3584 533.8 7e-151
>>XP_016873261 (OMIM: 600814,604391) PREDICTED: double-s (708 aa)
initn: 4644 init1: 4644 opt: 4644 Z-score: 3660.7 bits: 687.9 E(85289): 3.6e-197
Smith-Waterman score: 4644; 100.0% identity (100.0% similar) in 708 aa overlap (1-708:1-708)
10 20 30 40 50 60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
610 620 630 640 650 660
670 680 690 700
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
670 680 690 700
>>NP_005582 (OMIM: 600814,604391) double-strand break re (708 aa)
initn: 4644 init1: 4644 opt: 4644 Z-score: 3660.7 bits: 687.9 E(85289): 3.6e-197
Smith-Waterman score: 4644; 100.0% identity (100.0% similar) in 708 aa overlap (1-708:1-708)
10 20 30 40 50 60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
610 620 630 640 650 660
670 680 690 700
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
670 680 690 700
>>XP_011541139 (OMIM: 600814,604391) PREDICTED: double-s (708 aa)
initn: 4644 init1: 4644 opt: 4644 Z-score: 3660.7 bits: 687.9 E(85289): 3.6e-197
Smith-Waterman score: 4644; 100.0% identity (100.0% similar) in 708 aa overlap (1-708:1-708)
10 20 30 40 50 60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
610 620 630 640 650 660
670 680 690 700
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
670 680 690 700
>>NP_001317276 (OMIM: 600814,604391) double-strand break (707 aa)
initn: 4625 init1: 3930 opt: 4627 Z-score: 3647.4 bits: 685.4 E(85289): 2e-196
Smith-Waterman score: 4627; 99.9% identity (99.9% similar) in 708 aa overlap (1-708:1-707)
10 20 30 40 50 60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_001 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGR-DTGLE
550 560 570 580 590
610 620 630 640 650 660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
600 610 620 630 640 650
670 680 690 700
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
660 670 680 690 700
>>XP_006718905 (OMIM: 600814,604391) PREDICTED: double-s (707 aa)
initn: 4625 init1: 3930 opt: 4627 Z-score: 3647.4 bits: 685.4 E(85289): 2e-196
Smith-Waterman score: 4627; 99.9% identity (99.9% similar) in 708 aa overlap (1-708:1-707)
10 20 30 40 50 60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
XP_006 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGR-DTGLE
550 560 570 580 590
610 620 630 640 650 660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
600 610 620 630 640 650
670 680 690 700
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
660 670 680 690 700
>>NP_005581 (OMIM: 600814,604391) double-strand break re (680 aa)
initn: 3976 init1: 3935 opt: 3950 Z-score: 3116.0 bits: 587.0 E(85289): 8e-167
Smith-Waterman score: 4415; 96.0% identity (96.0% similar) in 708 aa overlap (1-708:1-680)
10 20 30 40 50 60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRA-----
550 560 570 580 590
610 620 630 640 650 660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
:::::::::::::::::::::::::::::::::::::
NP_005 -----------------------FKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
600 610 620 630
670 680 690 700
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
640 650 660 670 680
>>XP_005274065 (OMIM: 600814,604391) PREDICTED: double-s (552 aa)
initn: 3584 init1: 3584 opt: 3584 Z-score: 2829.8 bits: 533.8 E(85289): 7e-151
Smith-Waterman score: 3584; 100.0% identity (100.0% similar) in 552 aa overlap (157-708:1-552)
130 140 150 160 170 180
pF1KB9 GNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPD
::::::::::::::::::::::::::::::
XP_005 MSVEKIDISPVLLQKGSTKIALYGLGSIPD
10 20 30
190 200 210 220 230 240
pF1KB9 ERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHE
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB9 HECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQ
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB9 FFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEKPLVRLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEKPLVRLR
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB9 VDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITKPSEGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITKPSEGTT
220 230 240 250 260 270
430 440 450 460 470 480
pF1KB9 LRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEKTQRFLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEKTQRFLK
280 290 300 310 320 330
490 500 510 520 530 540
pF1KB9 ERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAFSADDLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAFSADDLM
340 350 360 370 380 390
550 560 570 580 590 600
pF1KB9 SIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLETSTRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLETSTRSR
400 410 420 430 440 450
610 620 630 640 650 660
pF1KB9 NSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTSKTDQRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTSKTDQRW
460 470 480 490 500 510
670 680 690 700
pF1KB9 SSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::
XP_005 SSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
520 530 540 550
708 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:55:49 2016 done: Sat Nov 5 18:55:51 2016
Total Scan time: 11.800 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]