(Circular) (Six-base) MAPSORT of: pFN21AB7547.seq Check: 490 from: 1 to: 5260 pFN21AB7547 5260 bp With 182 enzymes: SgfI * April 15, 2010 09:34 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2156 2156 Size: 5260 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3070 278 Size: 53 83 186 936 1534 2468 Fragments arranged by size: 2468 1534 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2182 2603 1937 Size: 245 421 4594 Fragments arranged by size: 4594 421 245 Acc65I G'GTAC_C Cuts at: 2581 2581 Size: 5260 AclI AA'CG_TT Cuts at: 1563 3387 3760 1563 Size: 1824 373 3063 Fragments arranged by size: 3063 1824 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2003 3323 4707 4975 1632 Size: 371 1320 1384 268 1917 Fragments arranged by size: 1917 1384 1320 371 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5063 AflIII A'CryG_T Cuts at: 1203 2185 4159 5136 1203 Size: 982 1974 977 1327 Fragments arranged by size: 1974 1327 982 977 AgeI A'CCGG_T Cuts at: 4091 4091 Size: 5260 AhdI GACnn_n'nnGTC Cuts at: 3989 3989 Size: 5260 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5260 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2164 1184 Size: 980 4280 AlwNI CAG_nnn'CTG Cuts at: 2136 3003 4575 2136 Size: 867 1572 2821 Fragments arranged by size: 2821 1572 867 ApaLI G'TGCA_C Cuts at: 3317 4473 3317 Size: 1156 4104 ApoI r'AATT_y Cuts at: 1493 2536 2569 2795 2947 5056 1493 Size: 1043 33 226 152 2109 1697 Fragments arranged by size: 2109 1697 1043 226 152 33 AseI AT'TA_AT Cuts at: 160 1032 2117 3814 160 Size: 872 1085 1697 1606 Fragments arranged by size: 1697 1606 1085 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5260 AvaI C'yCGr_G Cuts at: 1870 1943 2036 2585 1870 Size: 73 93 549 4545 Fragments arranged by size: 4545 549 93 73 BamHI G'GATC_C Cuts at: 2590 2957 2590 Size: 367 4893 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2581 4036 618 Size: 325 217 627 794 1455 1842 Fragments arranged by size: 1842 1455 794 627 325 217 BanII G_rGCy'C Cuts at: 1391 2579 1391 Size: 1188 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2338 2427 2457 928 Size: 971 439 89 30 3731 Fragments arranged by size: 3731 971 439 89 30 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3451 3485 1903 Size: 34 1514 34 3678 Fragments arranged by size: 3678 1514 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3152 4362 3152 Size: 1210 4050 BclI T'GATC_A Cuts at: 1548 1548 Size: 5260 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3871 136 Size: 107 122 71 631 605 2199 1525 Fragments arranged by size: 2199 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5255 5255 Size: 5260 BlpI GC'TnA_GC Cuts at: 2031 2677 2031 Size: 646 4614 Bme1580I G_kGCm'C Cuts at: 1790 3321 4477 1790 Size: 1531 1156 2573 Fragments arranged by size: 2573 1531 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5260 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2196 2991 3949 Size: 416 53 83 399 24 779 795 958 Cuts at: 3949 442 Size: 1753 Fragments arranged by size: 1753 958 795 779 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5260 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3920 1239 Size: 2681 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3385 4250 4548 3385 Size: 865 298 4097 Fragments arranged by size: 4097 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3923 882 Size: 617 2424 2219 Fragments arranged by size: 2424 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3051 493 Size: 711 1847 2702 Fragments arranged by size: 2702 1847 711 BsaBI GATnn'nnATC Cuts at: 5254 5254 Size: 5260 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3067 3449 4084 275 Size: 53 83 186 936 1534 382 635 1451 Fragments arranged by size: 1534 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3693 4091 4365 4512 4923 3693 Size: 398 274 147 411 4030 Fragments arranged by size: 4030 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5035 Fragments arranged by size: 5035 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5260 BseYI C'CCAG_C Cuts at: 2012 4463 4959 2012 Size: 2451 496 2313 Fragments arranged by size: 2451 2313 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4687 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2710 3471 4499 1540 Size: 275 186 709 761 1028 2301 Fragments arranged by size: 2301 1028 761 709 275 186 BsiHKAI G_wGCw'C Cuts at: 3321 3406 4477 3321 Size: 85 1071 4104 Fragments arranged by size: 4104 1071 85 BsmI GAATG_Cn' Cuts at: 2771 2864 2771 Size: 93 5167 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2579 3321 3406 4477 1391 Size: 399 789 742 85 1071 2174 Fragments arranged by size: 2174 1071 789 742 399 85 BspEI T'CCGG_A Cuts at: 4923 4923 Size: 5260 BspHI T'CATG_A Cuts at: 3149 4879 3149 Size: 1730 3530 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2156 2615 844 Size: 1312 459 3489 Fragments arranged by size: 3489 1312 459 BsrBI CCG'CTC Cuts at: 1394 1823 3147 1394 Size: 429 1324 3507 Fragments arranged by size: 3507 1324 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3755 3929 65 Size: 1183 2507 174 1396 Fragments arranged by size: 2507 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3904 4091 1700 Size: 110 2094 187 2869 Fragments arranged by size: 2869 2094 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5260 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5260 BssSI C'ACGA_G Cuts at: 3320 4332 3320 Size: 1012 4248 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5260 BstBI TT'CG_AA Cuts at: 2258 4064 2258 Size: 1806 3454 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5260 BstYI r'GATC_y Cuts at: 1972 2590 2957 3342 3359 4811 4897 4909 5255 Size: 618 367 385 17 1452 86 12 346 Cuts at: 5255 1972 Size: 1977 Fragments arranged by size: 1977 1452 618 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4708 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4521 Fragments arranged by size: 4521 683 56 BtsI GCAGTG_nn' Cuts at: 2776 3570 3590 2776 Size: 794 20 4446 Fragments arranged by size: 4446 794 20 ClaI AT'CG_AT Cuts at: 1554 2409 1554 Size: 855 4405 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5225 DraI TTT'AAA Cuts at: 2564 2564 Size: 5260 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4267 809 Size: 507 2951 1802 Fragments arranged by size: 2951 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2707 3596 5225 Size: 54 1425 50 275 18 877 889 1629 Cuts at: 5225 8 Size: 43 Fragments arranged by size: 1629 1425 889 877 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2707 1537 Size: 275 895 4090 Fragments arranged by size: 4090 895 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3190 1353 Size: 1837 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3847 4221 4367 387 Size: 1064 138 2258 374 146 1280 Fragments arranged by size: 2258 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2003 3323 3920 4707 4975 1239 Size: 393 371 1320 597 787 268 1524 Fragments arranged by size: 1524 1320 787 597 393 371 268 EcoO109I rG'GnC_Cy Cuts at: 2133 2499 2133 Size: 366 4894 EcoRI G'AATT_C Cuts at: 2569 2947 2569 Size: 378 4882 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2313 2361 2313 Size: 48 5212 FspI TGC'GCA Cuts at: 3766 3766 Size: 5260 HaeII r_GCGC'y Cuts at: 1678 2031 4407 1678 Size: 353 2376 2531 Fragments arranged by size: 2531 2376 353 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3901 3933 3975 4007 1373 Size: 32 135 32 2329 32 42 32 2626 Fragments arranged by size: 2626 2329 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2604 2850 669 Size: 988 281 666 246 3079 Fragments arranged by size: 3079 988 666 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5260 HpaI GTT'AAC Cuts at: 2850 2850 Size: 5260 KpnI G_GTAC'C Cuts at: 2585 2585 Size: 5260 MfeI C'AATT_G Cuts at: 2070 2859 2070 Size: 789 4471 MluI A'CGCG_T Cuts at: 5136 5136 Size: 5260 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4374 4558 1305 Size: 3069 184 2007 Fragments arranged by size: 3069 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3438 Fragments arranged by size: 3438 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3218 3577 3736 518 Size: 648 2052 359 159 2042 Fragments arranged by size: 2052 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2676 3353 4501 4746 1606 Size: 1070 677 1148 245 2120 Fragments arranged by size: 2120 1148 1070 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4708 NdeI CA'TA_TG Cuts at: 387 387 Size: 5260 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5260 NotI GC'GGCC_GC Cuts at: 2707 2707 Size: 5260 NspI r_CATG'y Cuts at: 1132 1229 2189 2618 4163 1132 Size: 97 960 429 1545 2229 Fragments arranged by size: 2229 1545 960 429 97 PasI CC'CwG_GG Cuts at: 1348 2136 1348 Size: 788 4472 PciI A'CATG_T Cuts at: 2185 4159 2185 Size: 1974 3286 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5260 PmeI GTTT'AAAC Cuts at: 2564 2564 Size: 5260 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3329 3361 4842 4874 3329 Size: 32 1481 32 3715 Fragments arranged by size: 3715 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2499 2499 Size: 5260 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5260 PsiI TTA'TAA Cuts at: 2830 2830 Size: 5260 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 2332 2364 2332 Size: 32 5228 PstI C_TGCA'G Cuts at: 830 2153 2612 830 Size: 1323 459 3478 Fragments arranged by size: 3478 1323 459 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5260 SalI G'TCGA_C Cuts at: 1936 2602 1936 Size: 666 4594 SbfI CC_TGCA'GG Cuts at: 2612 2612 Size: 5260 ScaI AGT'ACT Cuts at: 3508 5220 3508 Size: 1712 3548 SfcI C'TryA_G Cuts at: 826 1045 2149 2608 3743 4424 4615 826 Size: 219 1104 459 1135 681 191 1471 Fragments arranged by size: 1471 1135 1104 681 459 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5260 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5260 SmaI CCC'GGG Cuts at: 1872 2587 1872 Size: 715 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3364 4265 4527 820 Size: 197 926 1421 901 262 1553 Fragments arranged by size: 1553 1421 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3051 493 Size: 2558 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5260 SphI G_CATG'C Cuts at: 1132 2618 1132 Size: 1486 3774 SspI AAT'ATT Cuts at: 5 52 3184 5 Size: 47 3132 2081 Fragments arranged by size: 3132 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5260 StyI C'CwwG_G Cuts at: 513 1065 2699 513 Size: 552 1634 3074 Fragments arranged by size: 3074 1634 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2250 3287 3304 3457 3642 4087 325 Size: 1255 670 1037 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1037 670 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3506 5218 96 Size: 274 80 33 51 1443 1529 1712 138 Fragments arranged by size: 1712 1529 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5220 5252 5220 Size: 32 5228 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5260 XbaI T'CTAG_A Cuts at: 2443 2596 2443 Size: 153 5107 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5260 XmaI C'CCGG_G Cuts at: 1870 2585 1870 Size: 715 4545 XmnI GAAnn'nnTTC Cuts at: 3389 3389 Size: 5260 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3068 276 Size: 53 83 186 936 1534 2468 Fragments arranged by size: 2468 1534 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PsrI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI