Result of FASTA (omim) for pFN21AB0928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0928, 364 aa
  1>>>pF1KB0928 364 - 364 aa - 364 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6837+/-0.000512; mu= 18.1625+/- 0.033
 mean_var=227.7636+/-57.872, 0's: 0 Z-trim(114.2): 104  B-trim: 2678 in 2/50
 Lambda= 0.084983
 statistics sampled from 23765 (23905) to 23765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.28), width:  16
 Scan time:  7.820

The best scores are:                                      opt bits E(85289)
NP_002887 (OMIM: 602571) RNA-binding protein 4 iso ( 364) 2388 306.1 7.9e-83
NP_001185773 (OMIM: 602571) RNA-binding protein 4  ( 173)  911 124.5 1.8e-28
NP_001185772 (OMIM: 602571) RNA-binding protein 4  ( 143)  905 123.6 2.7e-28
NP_006319 (OMIM: 612409) RNA-binding protein 14 is ( 669)  471 71.5   6e-12
NP_001185765 (OMIM: 612409) RNA-binding protein 14 ( 156)  433 65.8 7.5e-11
NP_001185766 (OMIM: 612409) RNA-binding protein 14 ( 119)  301 49.4 4.9e-06


>>NP_002887 (OMIM: 602571) RNA-binding protein 4 isoform  (364 aa)
 initn: 2388 init1: 2388 opt: 2388  Z-score: 1608.0  bits: 306.1 E(85289): 7.9e-83
Smith-Waterman score: 2388; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)

               10        20        30        40        50        60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR
              310       320       330       340       350       360

           
pF1KB0 YSAF
       ::::
NP_002 YSAF
           

>>NP_001185773 (OMIM: 602571) RNA-binding protein 4 isof  (173 aa)
 initn: 911 init1: 911 opt: 911  Z-score: 632.1  bits: 124.5 E(85289): 1.8e-28
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
       :::::::::::::::::::                                         
NP_001 AEDAVEAIRGLDNTEFQGKITPVTEGYCCCNKGHTYIFKNCNLILESRKSRRC       
              130       140       150       160       170          

>>NP_001185772 (OMIM: 602571) RNA-binding protein 4 isof  (143 aa)
 initn: 905 init1: 905 opt: 905  Z-score: 628.9  bits: 123.6 E(85289): 2.7e-28
Smith-Waterman score: 905; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
       ::::::::::::::::::                                          
NP_001 AEDAVEAIRGLDNTEFQGGMCVG                                     
              130       140                                        

>>NP_006319 (OMIM: 612409) RNA-binding protein 14 isofor  (669 aa)
 initn: 505 init1: 322 opt: 471  Z-score: 335.5  bits: 71.5 E(85289): 6e-12
Smith-Waterman score: 487; 34.3% identity (59.8% similar) in 321 aa overlap (2-305:1-319)

               10         20        30        40        50         
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
        .:.:.::.   ..: .:. .::  :: :. : ..:...:::......:  ::. :: ..
NP_006  MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
                10        20        30        40        50         

      60         70        80        90       100       110        
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
       :. :  . :: :. .  .. :. :::.: .::..:::. ::. : :::::.:::::::::
NP_006 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
       :.  ::  ::  :.. : .:::..:.:::.  . .::.. :::  .  : :  .   :  
NP_006 EKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG-DKTKKPGAGDTAFP-G
     120       130       140       150       160        170        

      180         190           200          210           220     
pF1KB0 RSGRVA--DLTEQYNEQYGA----VRTPYTMSYG---DSLYYN---NAYGA-LDAYYKRC
        .:  :  :  . .... :.    .: :    .:   . :  .    .: : : :     
NP_006 TGGFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATY
       180       190       200       210       220       230       

         230       240       250       260       270         280   
pF1KB0 RAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLD-PYDRHLL-PTSGAA
       ::  :    ::  :.            :.. ..:      :.::  ::  .:  :.: .:
NP_006 RAQPSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSA
       240       250       260       270       280       290       

           290       300       310       320       330       340   
pF1KB0 ATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNS
       :... .  ..:  .:.. : ::                                      
NP_006 AASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYG
       300       310       320       330       340       350       

>>NP_001185765 (OMIM: 612409) RNA-binding protein 14 iso  (156 aa)
 initn: 391 init1: 288 opt: 433  Z-score: 315.8  bits: 65.8 E(85289): 7.5e-11
Smith-Waterman score: 433; 45.3% identity (75.7% similar) in 148 aa overlap (2-147:1-148)

               10         20        30        40        50         
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
        .:.:.::.   ..: .:. .::  :: :. : ..:...:::......:  ::. :: ..
NP_001  MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
                10        20        30        40        50         

      60         70        80        90       100       110        
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
       :. :  . :: :. .  .. :. :::.: .::..:::. ::. : :::::.:::::::::
NP_001 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
       :.  ::  ::  :.. : .:::..:.:::                               
NP_001 EKEADAKAAIAQLNGKEVKGKRINVELSTKGMVPTGV                       
     120       130       140       150                             

>>NP_001185766 (OMIM: 612409) RNA-binding protein 14 iso  (119 aa)
 initn: 259 init1: 156 opt: 301  Z-score: 229.3  bits: 49.4 E(85289): 4.9e-06
Smith-Waterman score: 301; 41.1% identity (75.0% similar) in 112 aa overlap (2-111:1-112)

               10         20        30        40        50         
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
        .:.:.::.   ..: .:. .::  :: :. : ..:...:::......:  ::. :: ..
NP_001  MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
                10        20        30        40        50         

      60         70        80        90       100       110        
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
       :. :  . :: :. .  .. :. :::.: .::..:::. ::. : :::::.::       
NP_001 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKGMVPTGV
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID




364 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:57:36 2016 done: Sat Nov  5 17:57:37 2016
 Total Scan time:  7.820 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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