Result of FASTA (ccds) for
pFN21AE0632
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0632, 376 aa
1>>>pF1KE0632 376 - 376 aa - 376 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6065+/-0.000761; mu= 11.9187+/- 0.046
mean_var=128.6393+/-24.546, 0's: 0 Z-trim(112.7): 60 B-trim: 7 in 1/53
Lambda= 0.113080
statistics sampled from 13404 (13460) to 13404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.413), width: 16
Scan time: 3.090
The best scores are: opt bits E(32554)
CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18 ( 376) 2525 422.8 2.4e-118
CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20 ( 372) 1331 228.0 1e-59
CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16 ( 346) 1084 187.7 1.3e-47
CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16 ( 345) 1081 187.2 1.9e-47
>>CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18 (376 aa)
initn: 2525 init1: 2525 opt: 2525 Z-score: 2238.1 bits: 422.8 E(32554): 2.4e-118
Smith-Waterman score: 2525; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KE0 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLGAGSLCRRRRALGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLGAGSLCRRRRALGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LRDEGPRRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LRDEGPRRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGASV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 RVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 HNLIVTVKPANQRNNVVRGGRALGSSGPPSDGTAGFVGPPAPRVLQNFHPDEAESDEDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HNLIVTVKPANQRNNVVRGGRALGSSGPPSDGTAGFVGPPAPRVLQNFHPDEAESDEDND
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 VVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRADPRHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRADPRHSL
310 320 330 340 350 360
370
pF1KE0 ALPPGGVEEHGPAVTL
::::::::::::::::
CCDS12 ALPPGGVEEHGPAVTL
370
>>CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20 (372 aa)
initn: 1306 init1: 802 opt: 1331 Z-score: 1185.4 bits: 228.0 E(32554): 1e-59
Smith-Waterman score: 1331; 64.2% identity (86.4% similar) in 316 aa overlap (1-314:1-309)
10 20 30 40 50
pF1KE0 MNRSFHKSQTLRFYDC-SAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSD
:::: :. . : ...:::::::::::::::.: ::::::.:: :. :.:.: : :
CCDS33 MNRS-HRHGAGS--GCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVD
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 VTIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLGAGSLCRRRRAL-
: .::::.::::::::::::. ::::.::::::.::::.:::. ...:. .: ... .:
CCDS33 VLVGYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYSAFGTDTLIKKKNVLT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 GALRDEGPRRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGA
..:: .. :.. :. :..:.::::::::::::..:::::::::...: :::::::::::.
CCDS33 NVLRPDNHRKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SVRVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIA
:::::::::::::::::::.::::::.:::::::::::::::::::.::.::::::::::
CCDS33 SVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 NSHNLIVTVKPANQRNNVVRGGRALGSSGPPSDGTAGFVGPPAPRVLQNFHPDEAESDED
::.:::.::.::::::::::..:. :::: .:.. ..: : .. .:.:.. .:.::
CCDS33 NSRNLIITVRPANQRNNVVRNSRTSGSSGQSTDNS--LLGYPQ-QIEPSFEPEDEDSEED
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 NDVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRADPRH
:..:: . : . :.
CCDS33 -DIIIEDNGVPQQIPKAVPNTESLESLTQIELSFESGQNGFIPSNEVSLAAIASSSNTEF
300 310 320 330 340 350
>>CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16 (346 aa)
initn: 776 init1: 749 opt: 1084 Z-score: 968.1 bits: 187.7 E(32554): 1.3e-47
Smith-Waterman score: 1110; 59.6% identity (77.9% similar) in 312 aa overlap (17-323:14-307)
10 20 30 40 50 60
pF1KE0 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV
: ::::::: ::::::.: : . . :..: .:. .:.: . ::
CCDS10 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDV
10 20 30 40 50
70 80 90 100 110
pF1KE0 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLG--AGSLCRRRRAL
.::.:.::::::..:::.. .:..:. : ::...::: ::. ..:. ..:: ::...:
CCDS10 LLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKRAEADSSGLAFASNSLQRRKKGL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 GALRDEGP-RRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDG
:: .: : : : :.::.::: :::.:::::.::::::::::.:: ..:::::::::
CCDS10 -LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 ASVRVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMI
::::.:.:::.::::::::.: ::::::::::::.::.::::::::::::::::::::.
CCDS10 MSVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 ANSHNLIVTVKPANQRNNVVRGGRALGS-SGPPSDGTAGFVGPPAPRVLQNFHPDEAESD
:::::::::::::::::::::: : : .:::: : :: : .::
CCDS10 ANSHNLIVTVKPANQRNNVVRG--ASGRLTGPPSAGP----GPAEP-----------DSD
240 250 260 270
300 310 320 330 340 350
pF1KE0 EDN-DVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRAD
.:. :.:::. :. . : : .:
CCDS10 DDSSDLVIENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRG
280 290 300 310 320 330
>>CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16 (345 aa)
initn: 756 init1: 756 opt: 1081 Z-score: 965.4 bits: 187.2 E(32554): 1.9e-47
Smith-Waterman score: 1107; 59.5% identity (77.5% similar) in 311 aa overlap (17-323:14-306)
10 20 30 40 50 60
pF1KE0 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV
: ::::::: ::::::.: : . . :..: .:. .:.: . ::
CCDS45 MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDV
10 20 30 40 50
70 80 90 100 110
pF1KE0 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERG-SLGAGSLCRRRRALG
.::.:.::::::..:::.. .:..:. : ::...:::: : .....:: ::...:
CCDS45 LLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKREADSSGLAFASNSLQRRKKGL-
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 ALRDEGP-RRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGA
:: .: : : : :.::.::: :::.:::::.::::::::::.:: ..:::::::::
CCDS45 LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGM
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 SVRVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIA
::::.:.:::.::::::::.: ::::::::::::.::.::::::::::::::::::::.:
CCDS45 SVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 NSHNLIVTVKPANQRNNVVRGGRALGS-SGPPSDGTAGFVGPPAPRVLQNFHPDEAESDE
::::::::::::::::::::: : : .:::: : :: : .::.
CCDS45 NSHNLIVTVKPANQRNNVVRG--ASGRLTGPPSAGP----GPAEP-----------DSDD
240 250 260 270
300 310 320 330 340 350
pF1KE0 DN-DVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRADP
:. :.:::. :. . : : .:
CCDS45 DSSDLVIENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGD
280 290 300 310 320 330
376 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:54:01 2016 done: Sat Nov 5 17:54:02 2016
Total Scan time: 3.090 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]