Result of FASTA (omim) for
pFN21AB0407
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0407, 465 aa
1>>>pF1KB0407 465 - 465 aa - 465 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3893+/-0.000321; mu= 19.1189+/- 0.020
mean_var=102.0434+/-20.737, 0's: 0 Z-trim(118.4): 126 B-trim: 41 in 1/53
Lambda= 0.126964
statistics sampled from 31230 (31363) to 31230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.368), width: 16
Scan time: 9.440
The best scores are: opt bits E(85289)
NP_004553 (OMIM: 167000,211980,600116,602544,60757 ( 465) 3379 629.4 6.4e-180
XP_016866397 (OMIM: 167000,211980,600116,602544,60 ( 503) 3368 627.4 2.7e-179
XP_011534165 (OMIM: 167000,211980,600116,602544,60 ( 464) 3362 626.3 5.5e-179
XP_016866398 (OMIM: 167000,211980,600116,602544,60 ( 385) 2825 527.8 2e-149
NP_054642 (OMIM: 167000,211980,600116,602544,60757 ( 437) 1945 366.7 7.2e-101
NP_054643 (OMIM: 167000,211980,600116,602544,60757 ( 316) 1940 365.6 1.1e-100
XP_011515258 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 784) 249 56.3 3.6e-07
XP_016868793 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 784) 249 56.3 3.6e-07
XP_016868792 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 838) 249 56.3 3.7e-07
XP_005250910 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 838) 249 56.3 3.7e-07
XP_016868791 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 838) 249 56.3 3.7e-07
NP_904355 (OMIM: 607119) E3 ubiquitin-protein liga ( 838) 249 56.3 3.7e-07
NP_056250 (OMIM: 607119) E3 ubiquitin-protein liga ( 838) 249 56.3 3.7e-07
NP_001267468 (OMIM: 607119) E3 ubiquitin-protein l ( 838) 249 56.3 3.7e-07
NP_001120833 (OMIM: 610872) E3 ubiquitin-protein l ( 587) 224 51.6 7e-06
NP_001287755 (OMIM: 610872) E3 ubiquitin-protein l ( 731) 224 51.7 8.1e-06
XP_006710421 (OMIM: 610872) PREDICTED: E3 ubiquiti ( 588) 221 51.0 1e-05
XP_006710420 (OMIM: 610872) PREDICTED: E3 ubiquiti ( 688) 221 51.1 1.1e-05
XP_011512731 (OMIM: 607489) PREDICTED: cullin-9 is (1834) 226 52.5 1.2e-05
NP_699172 (OMIM: 610872) E3 ubiquitin-protein liga ( 732) 221 51.1 1.2e-05
XP_006710419 (OMIM: 610872) PREDICTED: E3 ubiquiti ( 732) 221 51.1 1.2e-05
XP_016866079 (OMIM: 607489) PREDICTED: cullin-9 is (1909) 226 52.5 1.2e-05
XP_011512729 (OMIM: 607489) PREDICTED: cullin-9 is (2095) 226 52.5 1.3e-05
XP_011512728 (OMIM: 607489) PREDICTED: cullin-9 is (2339) 226 52.6 1.4e-05
XP_011512727 (OMIM: 607489) PREDICTED: cullin-9 is (2456) 226 52.6 1.4e-05
NP_055904 (OMIM: 607489) cullin-9 [Homo sapiens] (2517) 226 52.6 1.5e-05
XP_011512726 (OMIM: 607489) PREDICTED: cullin-9 is (2539) 226 52.6 1.5e-05
XP_011512725 (OMIM: 607489) PREDICTED: cullin-9 is (2566) 226 52.6 1.5e-05
XP_011512724 (OMIM: 607489) PREDICTED: cullin-9 is (2566) 226 52.6 1.5e-05
XP_016866078 (OMIM: 607489) PREDICTED: cullin-9 is (2566) 226 52.6 1.5e-05
XP_011519741 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 465) 210 48.9 3.5e-05
XP_011519740 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 498) 210 48.9 3.7e-05
NP_005735 (OMIM: 605624) E3 ubiquitin-protein liga ( 557) 210 49.0 4e-05
XP_005268596 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 205 47.9 5.4e-05
XP_005268597 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 205 47.9 5.4e-05
XP_016865560 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 205 47.9 5.4e-05
XP_016865561 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 205 47.9 5.4e-05
NP_899645 (OMIM: 605675) E3 ubiquitin-protein liga ( 348) 205 47.9 5.4e-05
XP_005268598 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 348) 205 47.9 5.4e-05
NP_001304263 (OMIM: 605615) E3 ubiquitin-protein l ( 351) 204 47.7 6.2e-05
XP_005268594 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474) 205 48.0 6.7e-05
NP_899646 (OMIM: 605675) E3 ubiquitin-protein liga ( 474) 205 48.0 6.7e-05
XP_011536016 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474) 205 48.0 6.7e-05
XP_016865559 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474) 205 48.0 6.7e-05
NP_001188294 (OMIM: 605675) E3 ubiquitin-protein l ( 474) 205 48.0 6.7e-05
NP_899648 (OMIM: 605675) E3 ubiquitin-protein liga ( 474) 205 48.0 6.7e-05
NP_004281 (OMIM: 605675) E3 ubiquitin-protein liga ( 474) 205 48.0 6.7e-05
NP_899647 (OMIM: 605675) E3 ubiquitin-protein liga ( 474) 205 48.0 6.7e-05
XP_005268593 (OMIM: 605675) PREDICTED: E3 ubiquiti ( 474) 205 48.0 6.7e-05
XP_016861029 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409) 204 47.7 6.9e-05
>>NP_004553 (OMIM: 167000,211980,600116,602544,607572) E (465 aa)
initn: 3379 init1: 3379 opt: 3379 Z-score: 3351.1 bits: 629.4 E(85289): 6.4e-180
Smith-Waterman score: 3379; 100.0% identity (100.0% similar) in 465 aa overlap (1-465:1-465)
10 20 30 40 50 60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
370 380 390 400 410 420
430 440 450 460
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
:::::::::::::::::::::::::::::::::::::::::::::
NP_004 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
430 440 450 460
>>XP_016866397 (OMIM: 167000,211980,600116,602544,607572 (503 aa)
initn: 3368 init1: 3368 opt: 3368 Z-score: 3339.8 bits: 627.4 E(85289): 2.7e-179
Smith-Waterman score: 3368; 99.6% identity (99.8% similar) in 465 aa overlap (1-465:39-503)
10 20 30
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVV
. ::::::::::::::::::::::::::::
XP_016 NSDNCTYSLKNSEPQPESGRLYTRPEREYPITVFVRFNSSHGFPVEVDSDTSIFQLKEVV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB0 AKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPWRKGQEMNATGGDDPRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPWRKGQEMNATGGDDPRN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB0 AAGGCEREPQSLTRVDLSSSVLPGDSVGLAVILHTDSRKDSPPAGSPAGRSIYNSFYVYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAGGCEREPQSLTRVDLSSSVLPGDSVGLAVILHTDSRKDSPPAGSPAGRSIYNSFYVYC
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB0 KGPCQRVQPGKLRVQCSTCRQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGPCQRVQPGKLRVQCSTCRQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFF
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB0 KCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVT
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB0 RLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGV
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB0 LCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQA
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB0 YRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCG
430 440 450 460 470 480
460
pF1KB0 CEWNRVCMGDHWFDV
:::::::::::::::
XP_016 CEWNRVCMGDHWFDV
490 500
>>XP_011534165 (OMIM: 167000,211980,600116,602544,607572 (464 aa)
initn: 2454 init1: 2454 opt: 3362 Z-score: 3334.3 bits: 626.3 E(85289): 5.5e-179
Smith-Waterman score: 3362; 99.8% identity (99.8% similar) in 465 aa overlap (1-465:1-464)
10 20 30 40 50 60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_011 VILHTDSRKDSPPAGSP-GRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
130 140 150 160 170
190 200 210 220 230 240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
360 370 380 390 400 410
430 440 450 460
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
420 430 440 450 460
>>XP_016866398 (OMIM: 167000,211980,600116,602544,607572 (385 aa)
initn: 2454 init1: 2454 opt: 2825 Z-score: 2803.7 bits: 527.8 E(85289): 2e-149
Smith-Waterman score: 2825; 99.7% identity (99.7% similar) in 386 aa overlap (80-465:1-385)
50 60 70 80 90 100
pF1KB0 LRNDWTVQNCDLDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSS
::::::::::::::::::::::::::::::
XP_016 MNATGGDDPRNAAGGCEREPQSLTRVDLSS
10 20 30
110 120 130 140 150 160
pF1KB0 SVLPGDSVGLAVILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTC
:::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
XP_016 SVLPGDSVGLAVILHTDSRKDSPPAGSP-GRSIYNSFYVYCKGPCQRVQPGKLRVQCSTC
40 50 60 70 80
170 180 190 200 210 220
pF1KB0 RQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQATLTLTQGPSCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLI
90 100 110 120 130 140
230 240 250 260 270 280
pF1KB0 ATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPC
150 160 170 180 190 200
290 300 310 320 330 340
pF1KB0 VAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRK
210 220 230 240 250 260
350 360 370 380 390 400
pF1KB0 VTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKE
270 280 290 300 310 320
410 420 430 440 450 460
pF1KB0 TIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
330 340 350 360 370 380
>>NP_054642 (OMIM: 167000,211980,600116,602544,607572) E (437 aa)
initn: 1939 init1: 1939 opt: 1945 Z-score: 1931.9 bits: 366.7 E(85289): 7.2e-101
Smith-Waterman score: 3090; 94.0% identity (94.0% similar) in 465 aa overlap (1-465:1-437)
10 20 30 40 50 60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQ--
130 140 150 160 170
190 200 210 220 230 240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
::::::::::::::::::::::::::::::::::
NP_054 --------------------------EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
180 190 200 210
250 260 270 280 290 300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
340 350 360 370 380 390
430 440 450 460
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
:::::::::::::::::::::::::::::::::::::::::::::
NP_054 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
400 410 420 430
>>NP_054643 (OMIM: 167000,211980,600116,602544,607572) E (316 aa)
initn: 1940 init1: 1940 opt: 1940 Z-score: 1928.6 bits: 365.6 E(85289): 1.1e-100
Smith-Waterman score: 2004; 68.0% identity (68.0% similar) in 465 aa overlap (1-465:1-316)
10 20 30 40 50 60
pF1KB0 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ---
10 20 30 40 50
70 80 90 100 110 120
pF1KB0 LDQQSIVHIVQRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
NP_054 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB0 VILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGP
NP_054 ------------------------------------------------------------
190 200 210 220 230 240
pF1KB0 SCWDDVLIPNRMSGECQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
::::::::::::::::::::::::::::::::::
NP_054 --------------------------EFFFKCGAHPTSDKETSVALHLIATNSRNITCIT
60 70 80 90
250 260 270 280 290 300
pF1KB0 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB0 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB0 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 GFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPR
220 230 240 250 260 270
430 440 450 460
pF1KB0 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
:::::::::::::::::::::::::::::::::::::::::::::
NP_054 CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
280 290 300 310
>>XP_011515258 (OMIM: 607119) PREDICTED: E3 ubiquitin-pr (784 aa)
initn: 192 init1: 89 opt: 249 Z-score: 249.8 bits: 56.3 E(85289): 3.6e-07
Smith-Waterman score: 249; 26.4% identity (54.6% similar) in 216 aa overlap (244-449:130-332)
220 230 240 250 260 270
pF1KB0 AHPTSDKETSVALHLIATNSRNITCITCTDVRSPV-LVFQCNSRHVICLDCFHLYCVTRL
.. :. :. . ..: . : : :: :
XP_011 EMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCL
100 110 120 130 140 150
280 290 300 310 320
pF1KB0 NDRQFVHDPQLGYSLPCVAGCPNSLIK-ELHHFR-ILGEE-QYNRYQQYGAEE-CVLQMG
::... ... : .. ::. . . : .: ::... ...:... .. : .
XP_011 --RQYLR-IEISESRVNIS-CPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPD
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB0 GVLCPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASG
:: : :: ... . :.:: : . ::: :: .::. .: .. :.:. . .
XP_011 CRWCPAPDCGYAVIAFGCASCPKLTC-GRE--GCGTEFCYHCKQIWHPNQTCDAARQERA
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB0 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRL
. . . . .. .:. . :: ::::: . . : .:.: :: : :
XP_011 QSLRLRTIRSSSISYSQESGAAADDIK----PCPRCAAYIIKMNDGSCNHMTCA--VCGC
280 290 300 310 320
450 460
pF1KB0 EWCWNCGCEWNRVCMGDHWFDV
:.:: :
XP_011 EFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAM
330 340 350 360 370 380
>>XP_016868793 (OMIM: 607119) PREDICTED: E3 ubiquitin-pr (784 aa)
initn: 192 init1: 89 opt: 249 Z-score: 249.8 bits: 56.3 E(85289): 3.6e-07
Smith-Waterman score: 249; 26.4% identity (54.6% similar) in 216 aa overlap (244-449:130-332)
220 230 240 250 260 270
pF1KB0 AHPTSDKETSVALHLIATNSRNITCITCTDVRSPV-LVFQCNSRHVICLDCFHLYCVTRL
.. :. :. . ..: . : : :: :
XP_016 EMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCL
100 110 120 130 140 150
280 290 300 310 320
pF1KB0 NDRQFVHDPQLGYSLPCVAGCPNSLIK-ELHHFR-ILGEE-QYNRYQQYGAEE-CVLQMG
::... ... : .. ::. . . : .: ::... ...:... .. : .
XP_016 --RQYLR-IEISESRVNIS-CPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPD
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB0 GVLCPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASG
:: : :: ... . :.:: : . ::: :: .::. .: .. :.:. . .
XP_016 CRWCPAPDCGYAVIAFGCASCPKLTC-GRE--GCGTEFCYHCKQIWHPNQTCDAARQERA
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB0 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRL
. . . . .. .:. . :: ::::: . . : .:.: :: : :
XP_016 QSLRLRTIRSSSISYSQESGAAADDIK----PCPRCAAYIIKMNDGSCNHMTCA--VCGC
280 290 300 310 320
450 460
pF1KB0 EWCWNCGCEWNRVCMGDHWFDV
:.:: :
XP_016 EFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAM
330 340 350 360 370 380
>>XP_016868792 (OMIM: 607119) PREDICTED: E3 ubiquitin-pr (838 aa)
initn: 192 init1: 89 opt: 249 Z-score: 249.5 bits: 56.3 E(85289): 3.7e-07
Smith-Waterman score: 249; 26.4% identity (54.6% similar) in 216 aa overlap (244-449:130-332)
220 230 240 250 260 270
pF1KB0 AHPTSDKETSVALHLIATNSRNITCITCTDVRSPV-LVFQCNSRHVICLDCFHLYCVTRL
.. :. :. . ..: . : : :: :
XP_016 EMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCL
100 110 120 130 140 150
280 290 300 310 320
pF1KB0 NDRQFVHDPQLGYSLPCVAGCPNSLIK-ELHHFR-ILGEE-QYNRYQQYGAEE-CVLQMG
::... ... : .. ::. . . : .: ::... ...:... .. : .
XP_016 --RQYLR-IEISESRVNIS-CPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPD
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB0 GVLCPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASG
:: : :: ... . :.:: : . ::: :: .::. .: .. :.:. . .
XP_016 CRWCPAPDCGYAVIAFGCASCPKLTC-GRE--GCGTEFCYHCKQIWHPNQTCDAARQERA
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB0 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRL
. . . . .. .:. . :: ::::: . . : .:.: :: : :
XP_016 QSLRLRTIRSSSISYSQESGAAADDIK----PCPRCAAYIIKMNDGSCNHMTCA--VCGC
280 290 300 310 320
450 460
pF1KB0 EWCWNCGCEWNRVCMGDHWFDV
:.:: :
XP_016 EFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAM
330 340 350 360 370 380
>>XP_005250910 (OMIM: 607119) PREDICTED: E3 ubiquitin-pr (838 aa)
initn: 192 init1: 89 opt: 249 Z-score: 249.5 bits: 56.3 E(85289): 3.7e-07
Smith-Waterman score: 249; 26.4% identity (54.6% similar) in 216 aa overlap (244-449:130-332)
220 230 240 250 260 270
pF1KB0 AHPTSDKETSVALHLIATNSRNITCITCTDVRSPV-LVFQCNSRHVICLDCFHLYCVTRL
.. :. :. . ..: . : : :: :
XP_005 EMCTDKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCL
100 110 120 130 140 150
280 290 300 310 320
pF1KB0 NDRQFVHDPQLGYSLPCVAGCPNSLIK-ELHHFR-ILGEE-QYNRYQQYGAEE-CVLQMG
::... ... : .. ::. . . : .: ::... ...:... .. : .
XP_005 --RQYLR-IEISESRVNIS-CPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPD
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB0 GVLCPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASG
:: : :: ... . :.:: : . ::: :: .::. .: .. :.:. . .
XP_005 CRWCPAPDCGYAVIAFGCASCPKLTC-GRE--GCGTEFCYHCKQIWHPNQTCDAARQERA
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB0 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRL
. . . . .. .:. . :: ::::: . . : .:.: :: : :
XP_005 QSLRLRTIRSSSISYSQESGAAADDIK----PCPRCAAYIIKMNDGSCNHMTCA--VCGC
280 290 300 310 320
450 460
pF1KB0 EWCWNCGCEWNRVCMGDHWFDV
:.:: :
XP_005 EFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLVGAPVGIALIAGIAIPAM
330 340 350 360 370 380
465 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:51:27 2016 done: Sat Nov 5 17:51:28 2016
Total Scan time: 9.440 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]