Result of FASTA (omim) for
pFN21AB0905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0905, 93 aa
1>>>pF1KB0905 93 - 93 aa - 93 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8582+/-0.000278; mu= 11.1162+/- 0.017
mean_var=57.0761+/-11.738, 0's: 0 Z-trim(118.4): 60 B-trim: 597 in 1/54
Lambda= 0.169765
statistics sampled from 31347 (31413) to 31347 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.368), width: 16
Scan time: 3.330
The best scores are: opt bits E(85289)
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 639 163.7 3.8e-41
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 483 125.6 1.4e-29
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 323 86.3 7.5e-18
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 323 86.3 7.5e-18
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 318 85.1 1.7e-17
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 311 83.4 5.7e-17
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 307 82.4 1.1e-16
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 271 73.6 4.9e-14
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 268 72.9 8.1e-14
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 248 68.0 2.5e-12
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 246 67.6 4.4e-12
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 246 67.6 4.4e-12
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 236 65.1 2e-11
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 236 65.1 2.7e-11
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 230 63.6 6.7e-11
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 220 61.1 3.1e-10
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 220 61.2 3.5e-10
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 219 60.9 3.5e-10
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 219 60.9 3.5e-10
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 219 61.0 5.1e-10
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 214 59.7 8.6e-10
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 212 59.2 1.2e-09
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 204 57.2 4.6e-09
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 202 56.8 7.8e-09
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 202 56.8 7.9e-09
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 200 56.2 8.9e-09
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 201 56.5 9.1e-09
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 201 56.5 9.1e-09
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 201 56.5 9.1e-09
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 192 54.3 3.7e-08
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 191 54.0 4.4e-08
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 188 53.2 5e-08
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 188 53.2 5e-08
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 189 53.5 6e-08
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 188 53.3 6.3e-08
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 186 52.8 9.5e-08
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 186 52.8 9.5e-08
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 171 49.1 1.2e-06
NP_001265665 (OMIM: 187011) C-C motif chemokine 5 ( 154) 158 46.1 1.7e-05
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 155 45.3 2.2e-05
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 154 45.0 2.9e-05
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 154 45.1 3.1e-05
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 152 44.5 3.6e-05
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 152 44.5 3.6e-05
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 141 41.8 0.00021
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 122 37.1 0.005
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 122 37.1 0.0051
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 127 38.7 0.007
>>NP_116739 (OMIM: 601392) C-C motif chemokine 14 isofor (93 aa)
initn: 639 init1: 639 opt: 639 Z-score: 859.7 bits: 163.7 E(85289): 3.8e-41
Smith-Waterman score: 639; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
10 20 30 40 50 60
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
:::::::::::::::::::::::::::::::::
NP_116 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90
>>NP_116738 (OMIM: 601392) C-C motif chemokine 14 isofor (109 aa)
initn: 619 init1: 483 opt: 483 Z-score: 652.2 bits: 125.6 E(85289): 1.4e-29
Smith-Waterman score: 591; 84.4% identity (85.3% similar) in 109 aa overlap (1-93:1-109)
10 20 30 40
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSR----------------GPYHPSECCFTYTTYKI
::::::::::::::::::::::::::. :::::::::::::::::
NP_116 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKI
10 20 30 40 50 60
50 60 70 80 90
pF1KB0 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90 100
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 325 init1: 307 opt: 323 Z-score: 441.5 bits: 86.3 E(85289): 7.5e-18
Smith-Waterman score: 323; 47.3% identity (82.4% similar) in 91 aa overlap (1-91:1-90)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
:..:.::. :: :.:: ... :. . :. :::.::. .::.. : ::.::.::::
NP_001 MQVSTAALAV-LLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
::...:.::::..::..::..::: :..:..
NP_001 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 325 init1: 307 opt: 323 Z-score: 441.5 bits: 86.3 E(85289): 7.5e-18
Smith-Waterman score: 323; 47.3% identity (82.4% similar) in 91 aa overlap (1-91:1-90)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
:..:.::. :: :.:: ... :. . :. :::.::. .::.. : ::.::.::::
NP_066 MQVSTAALAV-LLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
::...:.::::..::..::..::: :..:..
NP_066 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3 (92 aa)
initn: 299 init1: 279 opt: 318 Z-score: 434.9 bits: 85.1 E(85289): 1.7e-17
Smith-Waterman score: 318; 48.4% identity (82.4% similar) in 91 aa overlap (1-91:1-89)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
:..:.::. :: :.:: .. :.: . :. :::.::. .::.. : ::.::.::::
NP_002 MQVSTAALAV-LLCTMALCNQF-SASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
:::..:.:::...::..::..::: :..:..
NP_002 KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa)
initn: 301 init1: 276 opt: 311 Z-score: 425.7 bits: 83.4 E(85289): 5.7e-17
Smith-Waterman score: 311; 44.1% identity (80.6% similar) in 93 aa overlap (1-93:1-92)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
::. :... ...:.. :. . . :. : :. :::.::. :.::. ..:::::.: ::
NP_996 MKLCVTVLSLLVLVA-AFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
.:..:: ::::..::..::..:::.:. :.. :
NP_996 QPAVVFQTKRGKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 295 init1: 268 opt: 307 Z-score: 420.4 bits: 82.4 E(85289): 1.1e-16
Smith-Waterman score: 307; 43.0% identity (80.6% similar) in 93 aa overlap (1-93:1-92)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
::. :... ...:.. :. . . :. : :. :::.::. :.::. ..:::::.: ::
NP_002 MKLCVTVLSLLMLVA-AFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
.:..:: :::...::..::..:::.:. :.. :
NP_002 QPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>NP_002979 (OMIM: 603757) C-C motif chemokine 18 precur (89 aa)
initn: 290 init1: 267 opt: 271 Z-score: 372.9 bits: 73.6 E(85289): 4.9e-14
Smith-Waterman score: 271; 41.9% identity (76.3% similar) in 93 aa overlap (1-93:1-88)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
:: ..:: . :. :.:: . .. .. . ::..::...::.. :.:: ::. ::
NP_002 MK-GLAAALLVLVCTMALCSCAQVGT----NKELCCLVYTSWQIPQKFIVDYSETSPQCP
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
:::....::::...:..:. :::: ::.:.: :
NP_002 KPGVILLTKRGRQICADPNKKWVQKYISDLKLNA
60 70 80
>>NP_001278397 (OMIM: 610757) C-C motif chemokine 4-like (87 aa)
initn: 249 init1: 153 opt: 268 Z-score: 369.1 bits: 72.9 E(85289): 8.1e-14
Smith-Waterman score: 268; 39.8% identity (76.3% similar) in 93 aa overlap (1-93:1-87)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
::. :... ...:.. :. . . :. : :. :::.::. :.::. ..:::::.: ::
NP_001 MKLCVTVLSLLVLVA-AFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
.:..: :..::..::..:::.:. :.. :
NP_001 QPAVV-----GKQVCADPSESWVQEYVYDLELN
60 70 80
>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform (91 aa)
initn: 256 init1: 219 opt: 248 Z-score: 342.3 bits: 68.0 E(85289): 2.5e-12
Smith-Waterman score: 248; 38.7% identity (74.2% similar) in 93 aa overlap (1-91:1-89)
10 20 30 40 50
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHP--SECCFTYTTYKIPRQRIMDYYETNSQ
::.:.::. .::. :: .: .:: . :::.: . .:: .: .:. :...
NP_002 MKVSAAALAV-ILIATAL---CAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGK
10 20 30 40 50
60 70 80 90
pF1KB0 CSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
::.:..::.:.....::.:: :::..::....
NP_002 CSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
93 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:07:52 2016 done: Sat Nov 5 17:07:53 2016
Total Scan time: 3.330 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]