Result of FASTA (ccds) for pFN21AB0905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0905, 93 aa
  1>>>pF1KB0905 93 - 93 aa - 93 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4358+/-0.000578; mu= 7.7215+/- 0.034
 mean_var=59.1946+/-11.672, 0's: 0 Z-trim(111.8): 41  B-trim: 0 in 0/50
 Lambda= 0.166699
 statistics sampled from 12616 (12663) to 12616 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.389), width:  16
 Scan time:  1.420

The best scores are:                                      opt bits E(32554)
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17         (  93)  639 161.2 8.6e-41
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17         ( 109)  483 123.7 1.9e-29
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17      (  93)  323 85.2 6.5e-18
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17          (  92)  318 84.0 1.5e-17
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17          (  92)  307 81.3 9.2e-17
CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17         (  89)  271 72.7 3.6e-14
CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17        (  87)  268 71.9 5.8e-14
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17          (  91)  248 67.1 1.7e-12
CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17         ( 120)  246 66.7 3.1e-12
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17         (  98)  236 64.3 1.3e-11
CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17         ( 137)  236 64.3 1.8e-11
CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17         ( 120)  230 62.8 4.4e-11


>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17              (93 aa)
 initn: 639 init1: 639 opt: 639  Z-score: 845.8  bits: 161.2 E(32554): 8.6e-41
Smith-Waterman score: 639; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
               10        20        30        40        50        60

               70        80        90   
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       :::::::::::::::::::::::::::::::::
CCDS32 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
               70        80        90   

>>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17              (109 aa)
 initn: 619 init1: 483 opt: 483  Z-score: 642.0  bits: 123.7 E(32554): 1.9e-29
Smith-Waterman score: 591; 84.4% identity (85.3% similar) in 109 aa overlap (1-93:1-109)

               10        20                        30        40    
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSR----------------GPYHPSECCFTYTTYKI
       ::::::::::::::::::::::::::.                :::::::::::::::::
CCDS45 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKI
               10        20        30        40        50        60

           50        60        70        80        90   
pF1KB0 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
               70        80        90       100         

>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17           (93 aa)
 initn: 325 init1: 307 opt: 323  Z-score: 435.1  bits: 85.2 E(32554): 6.5e-18
Smith-Waterman score: 323; 47.3% identity (82.4% similar) in 91 aa overlap (1-91:1-90)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       :..:.::.   :: :.:: ... :.  .   :. :::.::. .::.. : ::.::.::::
CCDS32 MQVSTAALAV-LLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
               10         20        30        40        50         

               70        80        90    
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
       ::...:.::::..::..::..::: :..:..   
CCDS32 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
      60        70        80        90   

>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17               (92 aa)
 initn: 299 init1: 279 opt: 318  Z-score: 428.7  bits: 84.0 E(32554): 1.5e-17
Smith-Waterman score: 318; 48.4% identity (82.4% similar) in 91 aa overlap (1-91:1-89)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       :..:.::.   :: :.:: ..  :.: .   :. :::.::. .::.. : ::.::.::::
CCDS11 MQVSTAALAV-LLCTMALCNQF-SASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
               10         20         30        40        50        

               70        80        90    
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
       :::..:.:::...::..::..::: :..:..   
CCDS11 KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
       60        70        80        90  

>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17               (92 aa)
 initn: 295 init1: 268 opt: 307  Z-score: 414.4  bits: 81.3 E(32554): 9.2e-17
Smith-Waterman score: 307; 43.0% identity (80.6% similar) in 93 aa overlap (1-93:1-92)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       ::. :... ...:.. :. . . :.  :   :. :::.::. :.::. ..:::::.: ::
CCDS11 MKLCVTVLSLLMLVA-AFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
               10         20        30        40        50         

               70        80        90   
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       .:..:: :::...::..::..:::.:. :.. :
CCDS11 QPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
      60        70        80        90  

>>CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17              (89 aa)
 initn: 290 init1: 267 opt: 271  Z-score: 367.8  bits: 72.7 E(32554): 3.6e-14
Smith-Waterman score: 271; 41.9% identity (76.3% similar) in 93 aa overlap (1-93:1-88)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       :: ..::  . :. :.:: . .. ..    .   ::..::...::.. :.:: ::. :: 
CCDS11 MK-GLAAALLVLVCTMALCSCAQVGT----NKELCCLVYTSWQIPQKFIVDYSETSPQCP
                10        20            30        40        50     

               70        80        90    
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN 
       :::....::::...:..:. :::: ::.:.: : 
CCDS11 KPGVILLTKRGRQICADPNKKWVQKYISDLKLNA
          60        70        80         

>>CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17             (87 aa)
 initn: 249 init1: 153 opt: 268  Z-score: 364.1  bits: 71.9 E(32554): 5.8e-14
Smith-Waterman score: 268; 39.8% identity (76.3% similar) in 93 aa overlap (1-93:1-87)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       ::. :... ...:.. :. . . :.  :   :. :::.::. :.::. ..:::::.: ::
CCDS32 MKLCVTVLSLLVLVA-AFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
               10         20        30        40        50         

               70        80        90   
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       .:..:     :..::..::..:::.:. :.. :
CCDS32 QPAVV-----GKQVCADPSESWVQEYVYDLELN
      60             70        80       

>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17               (91 aa)
 initn: 256 init1: 219 opt: 248  Z-score: 337.8  bits: 67.1 E(32554): 1.7e-12
Smith-Waterman score: 248; 38.7% identity (74.2% similar) in 93 aa overlap (1-91:1-89)

               10        20        30          40        50        
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHP--SECCFTYTTYKIPRQRIMDYYETNSQ
       ::.:.::.   .::. ::      .: .::    . :::.: .  .:: .: .:. :...
CCDS11 MKVSAAALAV-ILIATAL---CAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGK
               10            20        30        40        50      

       60        70        80        90   
pF1KB0 CSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
       ::.:..::.:.....::.::  :::..::....  
CCDS11 CSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
         60        70        80        90 

>>CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17              (120 aa)
 initn: 249 init1: 161 opt: 246  Z-score: 333.2  bits: 66.7 E(32554): 3.1e-12
Smith-Waterman score: 246; 41.3% identity (69.6% similar) in 92 aa overlap (1-89:1-90)

               10        20        30           40        50       
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPY---HPSECCFTYTTYKIPRQRIMDYYETNS
       ::.: ::. ...:: : . . ..:. . :     :: ::. :    .::. .. : .. .
CCDS11 MKVSEAALSLLVLILI-ITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALN
               10         20        30        40        50         

        60        70        80        90                           
pF1KB0 QCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN                        
        :  :.:.:.:::.. :::::.: :::.::::                            
CCDS11 -CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLN
       60        70        80        90       100       110        

CCDS11 SQ
      120

>>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17              (98 aa)
 initn: 238 init1: 224 opt: 236  Z-score: 321.7  bits: 64.3 E(32554): 1.3e-11
Smith-Waterman score: 236; 37.8% identity (72.2% similar) in 90 aa overlap (1-90:1-89)

               10        20        30        40        50        60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
       ::.: :..  .::.: :.. .  ..  .   :: ::::... ::  ::. .:  :.:.: 
CCDS11 MKVS-AVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCP
                10        20        30        40        50         

               70        80        90         
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN      
       . ...: :: :. .:..:..::::.:.: .         
CCDS11 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
      60        70        80        90        




93 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:07:52 2016 done: Sat Nov  5 17:07:52 2016
 Total Scan time:  1.420 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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