Result of FASTA (omim) for
pFN21AB0473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0473, 499 aa
1>>>pF1KB0473 499 - 499 aa - 499 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1782+/-0.000472; mu= 14.8142+/- 0.030
mean_var=341.8772+/-74.966, 0's: 0 Z-trim(119.0): 136 B-trim: 1929 in 1/56
Lambda= 0.069365
statistics sampled from 32374 (32570) to 32374 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.382), width: 16
Scan time: 10.660
The best scores are: opt bits E(85289)
XP_016868729 (OMIM: 604819,615583) PREDICTED: poly ( 499) 3216 336.0 1.5e-91
NP_001258029 (OMIM: 604819,615583) poly(U)-binding ( 499) 3216 336.0 1.5e-91
NP_001258026 (OMIM: 604819,615583) poly(U)-binding ( 513) 3216 336.1 1.5e-91
NP_001258025 (OMIM: 604819,615583) poly(U)-binding ( 541) 3216 336.1 1.5e-91
NP_055096 (OMIM: 604819,615583) poly(U)-binding-sp ( 542) 3216 336.1 1.5e-91
XP_016868725 (OMIM: 604819,615583) PREDICTED: poly ( 579) 3216 336.1 1.6e-91
XP_011515232 (OMIM: 604819,615583) PREDICTED: poly ( 579) 3216 336.1 1.6e-91
NP_001129505 (OMIM: 604819,615583) poly(U)-binding ( 516) 2872 301.6 3.5e-81
XP_016868728 (OMIM: 604819,615583) PREDICTED: poly ( 516) 2872 301.6 3.5e-81
NP_001258028 (OMIM: 604819,615583) poly(U)-binding ( 530) 2872 301.7 3.5e-81
NP_001258027 (OMIM: 604819,615583) poly(U)-binding ( 558) 2872 301.7 3.6e-81
NP_510965 (OMIM: 604819,615583) poly(U)-binding-sp ( 559) 2872 301.7 3.6e-81
XP_016868724 (OMIM: 604819,615583) PREDICTED: poly ( 584) 2872 301.7 3.7e-81
XP_016868726 (OMIM: 604819,615583) PREDICTED: poly ( 596) 2872 301.7 3.7e-81
XP_011515231 (OMIM: 604819,615583) PREDICTED: poly ( 596) 2872 301.7 3.7e-81
XP_016868723 (OMIM: 604819,615583) PREDICTED: poly ( 596) 2872 301.7 3.7e-81
XP_016868727 (OMIM: 604819,615583) PREDICTED: poly ( 596) 2872 301.7 3.7e-81
NP_001020259 (OMIM: 612679) CUGBP Elav-like family ( 484) 288 43.0 0.0023
XP_011531379 (OMIM: 603518,604454) PREDICTED: nucl ( 385) 282 42.2 0.0032
NP_071505 (OMIM: 603518,604454) nucleolysin TIA-1 ( 386) 282 42.2 0.0032
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 278 41.7 0.0039
XP_016883636 (OMIM: 604739) PREDICTED: RNA-binding ( 341) 278 41.7 0.0039
XP_016883635 (OMIM: 604739) PREDICTED: RNA-binding ( 341) 278 41.7 0.0039
XP_016883632 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 278 41.8 0.0041
XP_016883634 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 278 41.8 0.0041
XP_016883630 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 278 41.8 0.0041
XP_016883633 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 278 41.8 0.0041
XP_016883631 (OMIM: 604739) PREDICTED: RNA-binding ( 367) 278 41.8 0.0041
NP_001310352 (OMIM: 604739) RNA-binding protein 39 ( 373) 278 41.8 0.0041
XP_011527413 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 278 41.8 0.0041
XP_006723954 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 278 41.8 0.0041
XP_006723953 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 278 41.8 0.0041
XP_016883629 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 278 41.8 0.0041
XP_016883628 (OMIM: 604739) PREDICTED: RNA-binding ( 373) 278 41.8 0.0041
XP_016883627 (OMIM: 604739) PREDICTED: RNA-binding ( 476) 278 42.0 0.0046
NP_001310351 (OMIM: 604739) RNA-binding protein 39 ( 498) 278 42.0 0.0048
NP_001229529 (OMIM: 604739) RNA-binding protein 39 ( 502) 278 42.0 0.0048
NP_001229528 (OMIM: 604739) RNA-binding protein 39 ( 508) 278 42.0 0.0048
NP_004893 (OMIM: 604739) RNA-binding protein 39 is ( 524) 278 42.1 0.0049
NP_001310353 (OMIM: 604739) RNA-binding protein 39 ( 529) 278 42.1 0.0049
NP_909122 (OMIM: 604739) RNA-binding protein 39 is ( 530) 278 42.1 0.0049
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 267 40.7 0.0085
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 267 40.7 0.0085
>>XP_016868729 (OMIM: 604819,615583) PREDICTED: poly(U)- (499 aa)
initn: 3216 init1: 3216 opt: 3216 Z-score: 1764.7 bits: 336.0 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499)
10 20 30 40 50 60
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR
430 440 450 460 470 480
490
pF1KB0 KVVAEVYDQERFDNSDLSA
:::::::::::::::::::
XP_016 KVVAEVYDQERFDNSDLSA
490
>>NP_001258029 (OMIM: 604819,615583) poly(U)-binding-spl (499 aa)
initn: 3216 init1: 3216 opt: 3216 Z-score: 1764.7 bits: 336.0 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499)
10 20 30 40 50 60
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB0 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR
430 440 450 460 470 480
490
pF1KB0 KVVAEVYDQERFDNSDLSA
:::::::::::::::::::
NP_001 KVVAEVYDQERFDNSDLSA
490
>>NP_001258026 (OMIM: 604819,615583) poly(U)-binding-spl (513 aa)
initn: 3216 init1: 3216 opt: 3216 Z-score: 1764.6 bits: 336.1 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:15-513)
10 20 30 40
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIA
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATATIALGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB0 HQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB0 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFN
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB0 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB0 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB0 TLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILAS
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB0 PPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVL
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB0 RNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH
430 440 450 460 470 480
470 480 490
pF1KB0 KAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
:::::::::::::::::::::::::::::::::
NP_001 KAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
490 500 510
>>NP_001258025 (OMIM: 604819,615583) poly(U)-binding-spl (541 aa)
initn: 3216 init1: 3216 opt: 3216 Z-score: 1764.4 bits: 336.1 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:43-541)
10 20 30
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKY
::::::::::::::::::::::::::::::
NP_001 QGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKY
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB0 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB0 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB0 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB0 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB0 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB0 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
380 390 400 410 420 430
400 410 420 430 440 450
pF1KB0 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
440 450 460 470 480 490
460 470 480 490
pF1KB0 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
500 510 520 530 540
>>NP_055096 (OMIM: 604819,615583) poly(U)-binding-splici (542 aa)
initn: 3216 init1: 3216 opt: 3216 Z-score: 1764.4 bits: 336.1 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:44-542)
10 20 30
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKY
::::::::::::::::::::::::::::::
NP_055 QGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKY
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB0 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB0 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB0 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB0 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB0 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB0 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
380 390 400 410 420 430
400 410 420 430 440 450
pF1KB0 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
440 450 460 470 480 490
460 470 480 490
pF1KB0 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
500 510 520 530 540
>>XP_016868725 (OMIM: 604819,615583) PREDICTED: poly(U)- (579 aa)
initn: 3216 init1: 3216 opt: 3216 Z-score: 1764.1 bits: 336.1 E(85289): 1.6e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:81-579)
10 20 30
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKY
::::::::::::::::::::::::::::::
XP_016 QGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKY
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB0 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB0 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
180 190 200 210 220 230
160 170 180 190 200 210
pF1KB0 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
240 250 260 270 280 290
220 230 240 250 260 270
pF1KB0 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
300 310 320 330 340 350
280 290 300 310 320 330
pF1KB0 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
360 370 380 390 400 410
340 350 360 370 380 390
pF1KB0 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
420 430 440 450 460 470
400 410 420 430 440 450
pF1KB0 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
480 490 500 510 520 530
460 470 480 490
pF1KB0 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
540 550 560 570
>>XP_011515232 (OMIM: 604819,615583) PREDICTED: poly(U)- (579 aa)
initn: 3216 init1: 3216 opt: 3216 Z-score: 1764.1 bits: 336.1 E(85289): 1.6e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:81-579)
10 20 30
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKY
::::::::::::::::::::::::::::::
XP_011 QGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKY
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB0 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB0 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
180 190 200 210 220 230
160 170 180 190 200 210
pF1KB0 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
240 250 260 270 280 290
220 230 240 250 260 270
pF1KB0 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
300 310 320 330 340 350
280 290 300 310 320 330
pF1KB0 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
360 370 380 390 400 410
340 350 360 370 380 390
pF1KB0 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
420 430 440 450 460 470
400 410 420 430 440 450
pF1KB0 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
480 490 500 510 520 530
460 470 480 490
pF1KB0 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
540 550 560 570
>>NP_001129505 (OMIM: 604819,615583) poly(U)-binding-spl (516 aa)
initn: 2867 init1: 2867 opt: 2872 Z-score: 1578.5 bits: 301.6 E(85289): 3.5e-81
Smith-Waterman score: 3172; 96.7% identity (96.7% similar) in 516 aa overlap (1-499:1-516)
10 20 30 40 50
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAA-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAV
10 20 30 40 50 60
60 70 80 90 100
pF1KB0 ----------------QRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD
::::::::::::::::::::::::::::::::::::::::::::
NP_001 TMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB0 SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEAR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB0 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB0 VSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB0 VLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPI
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB0 LASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTV
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB0 MVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS
430 440 450 460 470 480
470 480 490
pF1KB0 ETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
::::::::::::::::::::::::::::::::::::
NP_001 ETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
490 500 510
>>XP_016868728 (OMIM: 604819,615583) PREDICTED: poly(U)- (516 aa)
initn: 2867 init1: 2867 opt: 2872 Z-score: 1578.5 bits: 301.6 E(85289): 3.5e-81
Smith-Waterman score: 3172; 96.7% identity (96.7% similar) in 516 aa overlap (1-499:1-516)
10 20 30 40 50
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAA-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAV
10 20 30 40 50 60
60 70 80 90 100
pF1KB0 ----------------QRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD
::::::::::::::::::::::::::::::::::::::::::::
XP_016 TMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB0 SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEAR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB0 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB0 VSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB0 VLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPI
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB0 LASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTV
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB0 MVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS
430 440 450 460 470 480
470 480 490
pF1KB0 ETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
::::::::::::::::::::::::::::::::::::
XP_016 ETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
490 500 510
>>NP_001258028 (OMIM: 604819,615583) poly(U)-binding-spl (530 aa)
initn: 2867 init1: 2867 opt: 2872 Z-score: 1578.4 bits: 301.7 E(85289): 3.5e-81
Smith-Waterman score: 3172; 96.7% identity (96.7% similar) in 516 aa overlap (1-499:15-530)
10 20 30 40
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIA
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATATIALGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIA
10 20 30 40 50 60
50 60 70 80
pF1KB0 HQQQQLTNLQMAA-----------------QRQRALAIMCRVYVGSIYYELGEDTIRQAF
::::::::::::: ::::::::::::::::::::::::::::::
NP_001 HQQQQLTNLQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAF
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB0 APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB0 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB0 GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAA
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB0 TAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPP
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB0 IPVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARH
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB0 MVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDA
430 440 450 460 470 480
450 460 470 480 490
pF1KB0 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
490 500 510 520 530
499 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:02:57 2016 done: Sat Nov 5 17:02:59 2016
Total Scan time: 10.660 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]