hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20091008/iprscan-20091008-14142314/chunk_1/iprscan-20091008-14142314.nocrc
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Query sequence: pF1KB7956
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00170.11.fs bZIP transcription factor 51.2 6.7e-14 1
PF00170.11.ls bZIP transcription factor 53.2 7.9e-13 1
PF07716.5.fs Basic region leucine zipper 37.8 2.3e-09 1
PF07716.5.ls Basic region leucine zipper 39.8 8.8e-09 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00170.11.fs 1/1 215 279 .. 1 65 [] 51.2 6.7e-14
PF07716.5.fs 1/1 215 269 .. 1 57 [] 37.8 2.3e-09
PF00170.11.ls 1/1 215 279 .. 1 65 [] 53.2 7.9e-13
PF07716.5.ls 1/1 215 269 .. 1 57 [] 39.8 8.8e-09
Alignments of top-scoring domains:
PF00170.11.fs: domain 1 of 1, from 215 to 279: score 51.2, E = 6.7e-14
*->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
e+ lK+ rRk++N+ +A+ sR+RK+++i+ Le +v++ +a+N++L k
pF1KB7956 215 ERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQK 261
elerLkkevakLksenee<-*
++++L+ ++ +L +++
pF1KB7956 262 KVQELERHNISLVAQLRQ 279
PF07716.5.fs: domain 1 of 1, from 215 to 269: score 37.8, E = 2.3e-09
*->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
+ +++rR++rN ++A+ sR +kK+++++le rv + ++N++L
pF1KB7956 215 ERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQEL-- 259
rqkveqLekE<-*
+ kv+ Le++
pF1KB7956 260 QKKVQELERH 269
PF00170.11.ls: domain 1 of 1, from 215 to 279: score 53.2, E = 7.9e-13
*->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
e+ lK+ rRk++N+ +A+ sR+RK+++i+ Le +v++ +a+N++L k
pF1KB7956 215 ERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQELQK 261
elerLkkevakLksenee<-*
++++L+ ++ +L +++
pF1KB7956 262 KVQELERHNISLVAQLRQ 279
PF07716.5.ls: domain 1 of 1, from 215 to 269: score 39.8, E = 8.8e-09
*->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
+ +++rR++rN ++A+ sR +kK+++++le rv + ++N++L
pF1KB7956 215 ERVLKKVRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSAQNQEL-- 259
rqkveqLekE<-*
+ kv+ Le++
pF1KB7956 260 QKKVQELERH 269
//