Result of FASTA (ccds) for pFN21AB7927
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7927, 200 aa
  1>>>pF1KB7927 200 - 200 aa - 200 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2752+/-0.000705; mu= 13.8271+/- 0.043
 mean_var=65.0000+/-12.874, 0's: 0 Z-trim(109.5): 69  B-trim: 0 in 0/50
 Lambda= 0.159081
 statistics sampled from 10884 (10953) to 10884 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.336), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4          ( 200) 1310 308.8 1.5e-84
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4          ( 157)  873 208.4 1.9e-54
CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4          ( 149)  836 199.9 6.5e-52
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12         ( 152)  444 109.9 7.9e-25
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7         ( 147)  413 102.8 1.1e-22
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10         ( 147)  405 101.0 3.8e-22
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5         ( 147)  405 101.0 3.8e-22
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4          ( 148)  400 99.8 8.5e-22
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4          ( 147)  397 99.1 1.4e-21
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5         ( 118)  383 95.9 1.1e-20
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4          ( 149)  380 95.2 2.1e-20
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1          ( 197)  381 95.5 2.2e-20
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4         ( 118)  375 94.0 3.8e-20
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10        ( 109)  364 91.5   2e-19
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3          ( 201)  366 92.1 2.5e-19
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2         ( 207)  365 91.9   3e-19
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3          ( 193)  363 91.4 3.8e-19
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3         ( 160)  359 90.4 6.2e-19
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3          ( 176)  358 90.2 7.9e-19
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19        ( 222)  320 81.6   4e-16
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX          ( 152)  317 80.8 4.7e-16
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5           ( 152)  316 80.6 5.5e-16
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7           ( 183)  315 80.4 7.6e-16
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20        ( 179)  309 79.0 1.9e-15
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20        ( 140)  307 78.5 2.2e-15
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX          ( 119)  301 77.1 4.9e-15
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22        ( 154)  296 76.0 1.3e-14
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20        ( 150)  286 73.7 6.5e-14
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22        ( 212)  282 72.8 1.6e-13
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2         ( 185)  270 70.1 9.8e-13
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16         ( 158)  264 68.6 2.2e-12
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2        ( 161)  262 68.2 3.1e-12
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22        ( 122)  253 66.1   1e-11
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19         ( 183)  250 65.5 2.3e-11
CCDS63177.1 UBE2F gene_id:140739|Hs108|chr2        ( 153)  249 65.2 2.4e-11
CCDS63176.1 UBE2F gene_id:140739|Hs108|chr2        ( 164)  244 64.1 5.6e-11
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11         ( 153)  240 63.1 9.9e-11


>>CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4               (200 aa)
 initn: 1310 init1: 1310 opt: 1310  Z-score: 1631.5  bits: 308.8 E(32554): 1.5e-84
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
              130       140       150       160       170       180

              190       200
pF1KB7 VALSSKSWDVETATELLLSN
       ::::::::::::::::::::
CCDS33 VALSSKSWDVETATELLLSN
              190       200

>>CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4               (157 aa)
 initn: 870 init1: 870 opt: 873  Z-score: 1091.1  bits: 208.4 E(32554): 1.9e-54
Smith-Waterman score: 914; 78.5% identity (78.5% similar) in 200 aa overlap (1-200:1-157)

               10        20        30        40        50        60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
       :::::::::::::                                           ::::
CCDS47 EPDDPQDAVVANQ-------------------------------------------NAVI
              130                                                  

              190       200
pF1KB7 VALSSKSWDVETATELLLSN
       ::::::::::::::::::::
CCDS47 VALSSKSWDVETATELLLSN
       140       150       

>>CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4               (149 aa)
 initn: 836 init1: 836 opt: 836  Z-score: 1045.5  bits: 199.9 E(32554): 6.5e-52
Smith-Waterman score: 848; 74.5% identity (74.5% similar) in 200 aa overlap (1-200:1-149)

               10        20        30        40        50        60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
       :::::::::::::::::::::                                       
CCDS47 MANIAVQRIKREFKEVLKSEE---------------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ------------VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
                          30        40        50        60         

              130       140       150       160       170       180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
      70        80        90       100       110       120         

              190       200
pF1KB7 VALSSKSWDVETATELLLSN
       ::::::::::::::::::::
CCDS47 VALSSKSWDVETATELLLSN
     130       140         

>>CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12              (152 aa)
 initn: 439 init1: 244 opt: 444  Z-score: 559.2  bits: 109.9 E(32554): 7.9e-25
Smith-Waterman score: 444; 47.9% identity (72.9% similar) in 144 aa overlap (10-153:6-148)

               10        20        30        40        50        60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
                .: .::. .        ::..  . :   ..  :::: :.:.::: ..::.
CCDS31     MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLEL
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
        .:: ::.  :::::.:::.:::.... : ::::::::.:. :. .::::::.::::.: 
CCDS31 FLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAP
         60        70        80         90       100       110     

              130       140       150       160       170       180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
       .::::    ::.:.: :  .  .::: :...::                           
CCDS31 NPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI                       
         120       130       140       150                         

              190       200
pF1KB7 VALSSKSWDVETATELLLSN

>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7              (147 aa)
 initn: 403 init1: 214 opt: 413  Z-score: 521.0  bits: 102.8 E(32554): 1.1e-22
Smith-Waterman score: 413; 42.0% identity (72.0% similar) in 150 aa overlap (4-153:1-146)

               10        20        30        40        50        60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
          .:..::..:. .. ..  .   : ..  : ... . .. : :: :.::.:: . : :
CCDS54    MALKRIQKELTDLQRDPPA---QCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTI
                  10           20        30        40        50    

               70        80        90       100       110       120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
       ..:  :::.:::: : :::.::::.: .:.::::::..::. :.:.  ::::. .::   
CCDS54 HFPTDYPFKPPKVAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDP
           60        70        80         90       100       110   

              130       140       150       160       170       180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
       .::::    .:. :: . : ... :: :.. ::                           
CCDS54 NPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM                          
           120       130       140                                 

              190       200
pF1KB7 VALSSKSWDVETATELLLSN

>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10              (147 aa)
 initn: 392 init1: 205 opt: 405  Z-score: 511.0  bits: 101.0 E(32554): 3.8e-22
Smith-Waterman score: 405; 40.0% identity (73.3% similar) in 150 aa overlap (4-153:1-146)

               10        20        30        40        50        60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
          .:..::..:.... ..  .   . ..  : ... . .. : ::::. :.:: . : .
CCDS72    MALKRIQKELSDLQRDPPA---HCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTV
                  10           20        30        40        50    

               70        80        90       100       110       120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
       ..:  :::.:::. : :::.::::.: .:.::::::..::. :.:.  ::::. .::   
CCDS72 HFPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLSICSLLCDP
           60        70        80         90       100       110   

              130       140       150       160       170       180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
       .::::    .:. ::.. : ... :: :.. ::                           
CCDS72 NPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM                          
           120       130       140                                 

              190       200
pF1KB7 VALSSKSWDVETATELLLSN

>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5              (147 aa)
 initn: 393 init1: 207 opt: 405  Z-score: 511.0  bits: 101.0 E(32554): 3.8e-22
Smith-Waterman score: 405; 41.3% identity (72.0% similar) in 150 aa overlap (4-153:1-146)

               10        20        30        40        50        60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
          .:..::..:.... ..  .   : ..  : ... . .. : :: :.::.:: . : :
CCDS43    MALKRIHKELNDLARDPPA---QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI
                  10           20        30        40        50    

               70        80        90       100       110       120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
       ..:  :::.:::: : :.:.::::.: .:.::::::..::. :.:.  ::::. .::   
CCDS43 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP
           60        70        80         90       100       110   

              130       140       150       160       170       180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
       .::::    .:  :: . : ... :: :.. ::                           
CCDS43 NPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM                          
           120       130       140                                 

              190       200
pF1KB7 VALSSKSWDVETATELLLSN

>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4               (148 aa)
 initn: 386 init1: 205 opt: 400  Z-score: 504.8  bits: 99.8 E(32554): 8.5e-22
Smith-Waterman score: 400; 40.7% identity (72.0% similar) in 150 aa overlap (4-153:1-146)

               10        20        30        40        50        60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
          .:..::..:.... ..  .   : ..  : ... . .. : :: :.::.:: . : :
CCDS36    MALKRINKELSDLARDPPA---QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI
                  10           20        30        40        50    

               70        80        90       100       110       120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
       ..:  :::.:::: : :.:.::::.: .:.::::::..::. :.:.  ::::. .::   
CCDS36 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP
           60        70        80         90       100       110   

              130       140       150       160       170       180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
       .::::    .:  :: . . ... :: :.. ::                           
CCDS36 NPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML                         
           120       130       140                                 

              190       200
pF1KB7 VALSSKSWDVETATELLLSN

>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4               (147 aa)
 initn: 383 init1: 205 opt: 397  Z-score: 501.1  bits: 99.1 E(32554): 1.4e-21
Smith-Waterman score: 397; 40.0% identity (72.0% similar) in 150 aa overlap (4-153:1-146)

               10        20        30        40        50        60
pF1KB7 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI
          .:..::..:.... ..  .   : ..  : ... . .. : :: :.::.:: . : :
CCDS36    MALKRINKELSDLARDPPA---QCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTI
                  10           20        30        40        50    

               70        80        90       100       110       120
pF1KB7 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA
       ..:  :::.:::: : :.:.::::.: .:.::::::..::. :.:.  ::::. .::   
CCDS36 HFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDP
           60        70        80         90       100       110   

              130       140       150       160       170       180
pF1KB7 EPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVI
       .::::    .:  :: . . ... .: :.. ::                           
CCDS36 NPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM                          
           120       130       140                                 

              190       200
pF1KB7 VALSSKSWDVETATELLLSN

>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5              (118 aa)
 initn: 390 init1: 200 opt: 383  Z-score: 485.2  bits: 95.9 E(32554): 1.1e-20
Smith-Waterman score: 383; 50.5% identity (73.9% similar) in 111 aa overlap (43-153:8-117)

             20        30        40        50        60        70  
pF1KB7 FKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK
                                     : :: :.::.:: . : :..:  :::.:::
CCDS47                        MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPK
                                      10        20        30       

             80        90       100       110       120       130  
pF1KB7 VRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAN
       : : :.:.::::.: .:.::::::..::. :.:.  ::::. .::   .::::    .: 
CCDS47 VAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIAR
        40        50         60        70        80        90      

            140       150       160       170       180       190  
pF1KB7 QYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVET
        :: . : ... :: :.. ::                                       
CCDS47 IYKTDREKYNRIAREWTQKYAM                                      
        100       110                                              




200 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:39:04 2016 done: Sat Nov  5 14:39:04 2016
 Total Scan time:  2.140 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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