FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6786, 154 aa
  1>>>pF1KB6786 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7502+/-0.00038; mu= 10.6953+/- 0.024
 mean_var=79.4396+/-15.542, 0's: 0 Z-trim(113.8): 6  B-trim: 66 in 1/52
 Lambda= 0.143898
 statistics sampled from 23289 (23293) to 23289 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.273), width:  16
 Scan time:  5.200

The best scores are:                                      opt bits E(85289)
NP_002615 (OMIM: 604899) prefoldin subunit 5 isofo ( 154)  961 208.5 3.5e-54
NP_665904 (OMIM: 604899) prefoldin subunit 5 isofo ( 109)  548 122.7 1.7e-28


>>NP_002615 (OMIM: 604899) prefoldin subunit 5 isoform a  (154 aa)
 initn: 961 init1: 961 opt: 961  Z-score: 1093.8  bits: 208.5 E(85289): 3.5e-54
Smith-Waterman score: 961; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KB6 MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA
               70        80        90       100       110       120

              130       140       150    
pF1KB6 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
       ::::::::::::::::::::::::::::::::::
NP_002 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
              130       140       150    

>>NP_665904 (OMIM: 604899) prefoldin subunit 5 isoform g  (109 aa)
 initn: 677 init1: 542 opt: 548  Z-score: 632.7  bits: 122.7 E(85289): 1.7e-28
Smith-Waterman score: 591; 70.8% identity (70.8% similar) in 154 aa overlap (1-154:1-109)

               10        20        30        40        50        60
pF1KB6 MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGK
       ::::::::::::::::::::::::                                    
NP_665 MAQSINITELNLPQLEMLKNQLDQ------------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KB6 ELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA
                :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 ---------MYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA
                    30        40        50        60        70     

              130       140       150    
pF1KB6 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
       ::::::::::::::::::::::::::::::::::
NP_665 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
          80        90       100         




154 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:00:39 2016 done: Sat Nov  5 14:00:40 2016
 Total Scan time:  5.200 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]