Result of FASTA (ccds) for
pFN21AB5443
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5443, 193 aa
1>>>pF1KB5443 193 - 193 aa - 193 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2760+/-0.000842; mu= 12.2459+/- 0.050
mean_var=54.7644+/-10.705, 0's: 0 Z-trim(104.7): 42 B-trim: 0 in 0/52
Lambda= 0.173311
statistics sampled from 7985 (8025) to 7985 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.247), width: 16
Scan time: 1.890
The best scores are: opt bits E(32554)
CCDS10736.1 CBLN1 gene_id:869|Hs108|chr16 ( 193) 1266 324.6 2.4e-89
CCDS11999.1 CBLN2 gene_id:147381|Hs108|chr18 ( 224) 977 252.3 1.5e-67
CCDS13448.1 CBLN4 gene_id:140689|Hs108|chr20 ( 201) 890 230.6 4.9e-61
CCDS32057.1 CBLN3 gene_id:643866|Hs108|chr14 ( 205) 724 189.1 1.6e-48
CCDS8720.1 CAPRIN2 gene_id:65981|Hs108|chr12 (1077) 341 93.5 4.8e-19
CCDS31793.1 C1QL4 gene_id:338761|Hs108|chr12 ( 238) 296 82.1 2.9e-16
CCDS42737.1 C1QL2 gene_id:165257|Hs108|chr2 ( 287) 277 77.3 9.4e-15
CCDS31156.1 C1QL3 gene_id:389941|Hs108|chr10 ( 255) 271 75.8 2.4e-14
CCDS11492.1 C1QL1 gene_id:10882|Hs108|chr17 ( 258) 269 75.3 3.4e-14
CCDS3904.1 C1QTNF3 gene_id:114899|Hs108|chr5 ( 246) 250 70.6 8.8e-13
CCDS34141.1 C1QTNF3 gene_id:114899|Hs108|chr5 ( 319) 250 70.6 1.1e-12
>>CCDS10736.1 CBLN1 gene_id:869|Hs108|chr16 (193 aa)
initn: 1266 init1: 1266 opt: 1266 Z-score: 1717.6 bits: 324.6 E(32554): 2.4e-89
Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KB5 MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW
130 140 150 160 170 180
190
pF1KB5 KYSTFSGFLVFPL
:::::::::::::
CCDS10 KYSTFSGFLVFPL
190
>>CCDS11999.1 CBLN2 gene_id:147381|Hs108|chr18 (224 aa)
initn: 978 init1: 819 opt: 977 Z-score: 1326.0 bits: 252.3 E(32554): 1.5e-67
Smith-Waterman score: 977; 79.8% identity (88.6% similar) in 193 aa overlap (2-193:32-224)
10 20 30
pF1KB5 MLGVLELLLLGAAWLAGPARGQNETEPIVLE
::: ::: :.:.::.:::::::
CCDS11 QAPGRGPLGLRLMMPGRRGALREPGGCGSCLGVALALLLLLLPACCPVRAQNDTEPIVLE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GKCLVVCDSNPTSDPTGTA-LGISVRSGSAKVAFSAIRSTNHEPSEMSNRTMIIYFDQVL
:::::::::.:..: . :. :::::::::::::::: ::::::::::::::: :::::::
CCDS11 GKCLVVCDSSPSADGAVTSSLGISVRSGSAKVAFSATRSTNHEPSEMSNRTMTIYFDQVL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 VNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTR
:::::.:: : :.:::::::::.::::::::::::::::: ::.::::::::::::::
CCDS11 VNIGNHFDLASSIFVAPRKGIYSFSFHVVKVYNRQTIQVSLMQNGYPVISAFAGDQDVTR
130 140 150 160 170 180
160 170 180 190
pF1KB5 EAASNGVLIQMEKGDRAYLKLERGNLMGGWKYSTFSGFLVFPL
::::::::. ::. :...:::::::::::::::::::::::::
CCDS11 EAASNGVLLLMEREDKVHLKLERGNLMGGWKYSTFSGFLVFPL
190 200 210 220
>>CCDS13448.1 CBLN4 gene_id:140689|Hs108|chr20 (201 aa)
initn: 664 init1: 509 opt: 890 Z-score: 1209.2 bits: 230.6 E(32554): 4.9e-61
Smith-Waterman score: 890; 74.3% identity (91.6% similar) in 179 aa overlap (18-193:24-201)
10 20 30 40 50
pF1KB5 MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTA---L
:. .::.::::::::::::::::::..: :.. :
CCDS13 MGSGRRALSAVPAVLLVLTLPGLPVWAQNDTEPIVLEGKCLVVCDSNPATDSKGSSSSPL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 GISVRSGSAKVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGI
:::::....::::::.::::::::::::.: ::::::.:::.:: : : :.:.::::::
CCDS13 GISVRAANSKVAFSAVRSTNHEPSEMSNKTRIIYFDQILVNVGNFFTLE-SVFVAPRKGI
70 80 90 100 110
120 130 140 150 160 170
pF1KB5 YSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKL
:::.:::.:::. :::::.::::: :::::::::.:::::::.::::. ..: :..::::
CCDS13 YSFSFHVIKVYQSQTIQVNLMLNGKPVISAFAGDKDVTREAATNGVLLYLDKEDKVYLKL
120 130 140 150 160 170
180 190
pF1KB5 ERGNLMGGWKYSTFSGFLVFPL
:.:::.:::.::::::::::::
CCDS13 EKGNLVGGWQYSTFSGFLVFPL
180 190 200
>>CCDS32057.1 CBLN3 gene_id:643866|Hs108|chr14 (205 aa)
initn: 709 init1: 553 opt: 724 Z-score: 984.8 bits: 189.1 E(32554): 1.6e-48
Smith-Waterman score: 724; 58.8% identity (80.4% similar) in 194 aa overlap (4-193:21-205)
10 20 30 40
pF1KB5 MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDSN--
:: :: :::.: .:. .::..:::.:::::. .
CCDS32 MLGAKPHWLPGPLHSPGLPLVLVLLALGAGW------AQEGSEPVLLEGECLVVCEPGRA
10 20 30 40 50
50 60 70 80 90
pF1KB5 PTSDPTGTALGISVRSGSAKVAFSAIRSTNHEPS-EMSNRTM-IIYFDQVLVNIGNNFDS
.. : :.::: .. ..:::.:.:: .:::. : .: : ::::::::: :..::
CCDS32 AAGGPGGAALG---EAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDR
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB5 ERSTFIAPRKGIYSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLI
..:.:: .:.::: :::::::::::.::::::: ::::::::.: :::::::...::.
CCDS32 ASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLL
120 130 140 150 160 170
160 170 180 190
pF1KB5 QMEKGDRAYLKLERGNLMGGWKYSTFSGFLVFPL
.. :::. :.:.::::.::::::.:::::.:::
CCDS32 PLDPGDRVSLRLRRGNLLGGWKYSSFSGFLIFPL
180 190 200
>>CCDS8720.1 CAPRIN2 gene_id:65981|Hs108|chr12 (1077 aa)
initn: 317 init1: 218 opt: 341 Z-score: 455.4 bits: 93.5 E(32554): 4.8e-19
Smith-Waterman score: 341; 37.9% identity (68.6% similar) in 153 aa overlap (42-191:926-1075)
20 30 40 50 60
pF1KB5 AAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRS--GSAKVAFSAIRS
:...:..: : . : . .::::: :.
CCDS87 QVSSPERDNETFNSGDSGQGDSRSMTPVDVPVTNPAATILPVHVYPLPQQMRVAFSAART
900 910 920 930 940 950
70 80 90 100 110 120
pF1KB5 TNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQV
.: :. ... : :: .: :.:..:: . . : : .: : : ::..:. . :
CCDS87 SNLAPGTLDQ---PIVFDLLLNNLGETFDLQLGRFNCPVNGTYVFIFHMLKLAVNVPLYV
960 970 980 990 1000 1010
130 140 150 160 170 180
pF1KB5 SLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGG-WKYSTFSGF
.:: : ..::.:.: .:.::: ...:. .::. .:.:.:: ..:. ::::::::.
CCDS87 NLMKNEEVLVSAYANDGAPDHETASNHAILQLFQGDQIWLRLHRGAIYGSSWKYSTFSGY
1020 1030 1040 1050 1060 1070
190
pF1KB5 LVFPL
:..
CCDS87 LLYQD
>>CCDS31793.1 C1QL4 gene_id:338761|Hs108|chr12 (238 aa)
initn: 338 init1: 128 opt: 296 Z-score: 405.3 bits: 82.1 E(32554): 2.9e-16
Smith-Waterman score: 301; 31.7% identity (57.5% similar) in 186 aa overlap (11-192:64-237)
10 20 30 40
pF1KB5 MLGVLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDS
: : : :: . : :.
CCDS31 PHGPRGPGPDGAPASVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGR------P
40 50 60 70 80
50 60 70 80 90
pF1KB5 NPTSDPTGTALGISVRSGSA-KVAFSAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDS
.: . : :.. .: . ..:: : :: : .. ::.:..:.:: ...
CCDS31 GPPGPPGPGPGGVAPAAGYVPRIAFYAGLRRPHEGYE------VLRFDDVVTNVGNAYEA
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB5 ERSTFIAPRKGIYSFNFHVV-KVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVL
. : : :.: : .::. . . .. ..:: :: ::.: : : . . :::.:.
CCDS31 ASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVI
150 160 170 180 190 200
160 170 180 190
pF1KB5 IQMEKGDRAYLKLERGNLMGGW--KYSTFSGFLVFPL
.... ::....::. :.. :: ::::::::...:
CCDS31 LHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYPD
210 220 230
>>CCDS42737.1 C1QL2 gene_id:165257|Hs108|chr2 (287 aa)
initn: 266 init1: 118 opt: 277 Z-score: 378.3 bits: 77.3 E(32554): 9.4e-15
Smith-Waterman score: 277; 35.0% identity (66.4% similar) in 143 aa overlap (53-192:150-286)
30 40 50 60 70 80
pF1KB5 NETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSAKVAFSAIRSTNHEPSEMSNRTM
.:. .. :.:: . .. :: :
CCDS42 QLTAGTASGVGVVGGGAGVGGDSEGEVTSALSATFSGPKIAFYVGLKSPHEGYE------
120 130 140 150 160 170
90 100 110 120 130 140
pF1KB5 IIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVV-KVYNRQTIQVSLMLNGWPVISA
.. ::.:..:.::..: . : .::: :..:.. . . .. ..: :: ::
CCDS42 VLKFDDVVTNLGNHYDPTTGKFSCQVRGIYFFTYHILMRGGDGTSMWADLCKNGQVRASA
180 190 200 210 220 230
150 160 170 180 190
pF1KB5 FAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW--KYSTFSGFLVFPL
.: : : . . :::.:......::..:.::. :. :: :::::::::..:
CCDS42 IAQDADQNYDYASNSVVLHLDSGDEVYVKLDGGKAHGGNNNKYSTFSGFLLYPD
240 250 260 270 280
>>CCDS31156.1 C1QL3 gene_id:389941|Hs108|chr10 (255 aa)
initn: 283 init1: 115 opt: 271 Z-score: 371.1 bits: 75.8 E(32554): 2.4e-14
Smith-Waterman score: 271; 34.6% identity (63.4% similar) in 153 aa overlap (42-191:108-253)
20 30 40 50 60 70
pF1KB5 AAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSAKVAFSAIRSTN
: . .: :.. .. : :.:: : . .
CCDS31 PGEPGPPGPMGPPGEKGEPGRQGLPGPPGAPGLNAAG-AISAATYSTVPKIAFYAGLKRQ
80 90 100 110 120 130
80 90 100 110 120 130
pF1KB5 HEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVV-KVYNRQTIQVS
:: : .. ::.:..:.::..: . : ::: :..::. . . .. ..
CCDS31 HEGYE------VLKFDDVVTNLGNHYDPTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWAD
140 150 160 170 180 190
140 150 160 170 180
pF1KB5 LMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW--KYSTFSGF
: :. ::.: : : . . :::.:....: ::..:.::. :. :: ::::::::
CCDS31 LCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGF
200 210 220 230 240 250
190
pF1KB5 LVFPL
...
CCDS31 IIYAD
>>CCDS11492.1 C1QL1 gene_id:10882|Hs108|chr17 (258 aa)
initn: 313 init1: 115 opt: 269 Z-score: 368.3 bits: 75.3 E(32554): 3.4e-14
Smith-Waterman score: 269; 33.3% identity (63.4% similar) in 153 aa overlap (42-191:111-256)
20 30 40 50 60 70
pF1KB5 AAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSAKVAFSAIRSTN
: . .: :.. .. . .::: : ..
CCDS11 PGPPGDPGPPGPVGPPGEKGEPGKPGPPGLPGAGGSG-AISTATYTTVPRVAFYAGLKNP
90 100 110 120 130
80 90 100 110 120 130
pF1KB5 HEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVV-KVYNRQTIQVS
:: : .. ::.:..:.:::.:. . : : : :..::. . . .. ..
CCDS11 HEGYE------VLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLMRGGDGTSMWAD
140 150 160 170 180 190
140 150 160 170 180
pF1KB5 LMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGW--KYSTFSGF
: :: ::.: : : . . :::.:..... ::....::. :. :: ::::::::
CCDS11 LCKNGQVRASAIAQDADQNYDYASNSVILHLDAGDEVFIKLDGGKAHGGNSNKYSTFSGF
200 210 220 230 240 250
190
pF1KB5 LVFPL
...
CCDS11 IIYSD
>>CCDS3904.1 C1QTNF3 gene_id:114899|Hs108|chr5 (246 aa)
initn: 259 init1: 205 opt: 250 Z-score: 342.9 bits: 70.6 E(32554): 8.8e-13
Smith-Waterman score: 250; 34.8% identity (65.9% similar) in 132 aa overlap (61-191:117-243)
40 50 60 70 80 90
pF1KB5 EGKCLVVCDSNPTSDPTGTALGISVRSGSAKVAFSAIRSTNHEPSEMSNRTMIIYFDQVL
..:: : .:. .::.. : :..:
CCDS39 GDKGDLGPRGERGQHGPKGEKGYPGIPPELQIAFMASLATH-----FSNQNSGIIFSSVE
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB5 VNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQVSLMLNGWPVISAFAGDQDVTR
.:::: :: . : :: .:.: :.: ..: . . . : :: :: :.: .. ..
CCDS39 TNIGNFFDVMTGRFGAPVSGVYFFTFSMMKHEDVEEVYVYLMHNGNTVFSMYSYEMKGKS
150 160 170 180 190 200
160 170 180 190
pF1KB5 EAASNGVLIQMEKGDRAYLKLERGNLMGG-WKYSTFSGFLVFPL
...:: ..... :::...:.. : : : ..:::.:::.:
CCDS39 DTSSNHAVLKLAKGDEVWLRMGNGALHGDHQRFSTFAGFLLFETK
210 220 230 240
193 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:48:39 2016 done: Sat Nov 5 12:48:39 2016
Total Scan time: 1.890 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]