Result of FASTA (omim) for
pFN21AB3382
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3382, 421 aa
1>>>pF1KB3382 421 - 421 aa - 421 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7765+/-0.000403; mu= 14.5953+/- 0.025
mean_var=71.5226+/-14.505, 0's: 0 Z-trim(112.4): 132 B-trim: 68 in 1/50
Lambda= 0.151654
statistics sampled from 21164 (21299) to 21164 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.25), width: 16
Scan time: 8.100
The best scores are: opt bits E(85289)
NP_001260 (OMIM: 179710) regulator of chromosome c ( 421) 2822 626.9 3e-179
NP_001041664 (OMIM: 179710) regulator of chromosom ( 421) 2822 626.9 3e-179
NP_001041660 (OMIM: 179710) regulator of chromosom ( 438) 2695 599.1 7.1e-171
NP_001041659 (OMIM: 179710) regulator of chromosom ( 452) 2676 594.9 1.3e-169
NP_061185 (OMIM: 609587) protein RCC2 [Homo sapien ( 522) 394 95.7 3e-19
NP_001129676 (OMIM: 609587) protein RCC2 [Homo sap ( 522) 394 95.7 3e-19
NP_001305434 (OMIM: 605200) probable E3 ubiquitin- ( 368) 310 77.2 7.4e-14
XP_016871530 (OMIM: 609248) PREDICTED: probable E3 ( 936) 311 77.6 1.4e-13
NP_001265114 (OMIM: 609248) probable E3 ubiquitin- ( 979) 311 77.6 1.5e-13
NP_056416 (OMIM: 609248) probable E3 ubiquitin-pro (1049) 311 77.6 1.6e-13
NP_071362 (OMIM: 609248) probable E3 ubiquitin-pro (1057) 311 77.6 1.6e-13
XP_005263389 (OMIM: 605200) PREDICTED: probable E3 ( 896) 310 77.4 1.6e-13
XP_005263388 (OMIM: 605200) PREDICTED: probable E3 ( 903) 310 77.4 1.6e-13
XP_016864296 (OMIM: 605200) PREDICTED: probable E3 ( 924) 310 77.4 1.7e-13
NP_001258531 (OMIM: 605200) probable E3 ubiquitin- ( 932) 310 77.4 1.7e-13
XP_005263387 (OMIM: 605200) PREDICTED: probable E3 ( 993) 310 77.4 1.8e-13
XP_005263386 (OMIM: 605200) PREDICTED: probable E3 (1042) 310 77.4 1.8e-13
XP_016864295 (OMIM: 605200) PREDICTED: probable E3 (1042) 310 77.4 1.8e-13
XP_005263384 (OMIM: 605200) PREDICTED: probable E3 (1050) 310 77.4 1.9e-13
NP_055421 (OMIM: 605200) probable E3 ubiquitin-pro (1050) 310 77.4 1.9e-13
NP_036271 (OMIM: 606051) secretion-regulating guan ( 458) 295 74.0 8.7e-13
NP_003913 (OMIM: 605109,617011) probable E3 ubiqui (4861) 298 75.1 4.4e-12
XP_016878194 (OMIM: 605109,617011) PREDICTED: prob (4883) 298 75.1 4.4e-12
XP_016878193 (OMIM: 605109,617011) PREDICTED: prob (4885) 298 75.1 4.4e-12
XP_016878192 (OMIM: 605109,617011) PREDICTED: prob (4891) 298 75.1 4.4e-12
XP_016878191 (OMIM: 605109,617011) PREDICTED: prob (4892) 298 75.1 4.4e-12
XP_016878190 (OMIM: 605109,617011) PREDICTED: prob (4892) 298 75.1 4.4e-12
XP_016878189 (OMIM: 605109,617011) PREDICTED: prob (4897) 298 75.1 4.4e-12
XP_016878188 (OMIM: 605109,617011) PREDICTED: prob (4909) 298 75.1 4.4e-12
XP_016879989 (OMIM: 609799,613824,615415) PREDICTE ( 666) 273 69.3 3.4e-11
XP_011537899 (OMIM: 609248) PREDICTED: probable E3 ( 960) 275 69.8 3.5e-11
NP_835464 (OMIM: 609799,613824,615415) serine/thre ( 692) 273 69.3 3.5e-11
XP_016879988 (OMIM: 609799,613824,615415) PREDICTE ( 705) 273 69.3 3.6e-11
XP_011537896 (OMIM: 609248) PREDICTED: probable E3 (1011) 275 69.8 3.6e-11
XP_011537897 (OMIM: 609248) PREDICTED: probable E3 (1011) 275 69.8 3.6e-11
XP_011522942 (OMIM: 609799,613824,615415) PREDICTE ( 716) 273 69.3 3.6e-11
XP_011522940 (OMIM: 609799,613824,615415) PREDICTE ( 729) 273 69.3 3.7e-11
XP_011537895 (OMIM: 609248) PREDICTED: probable E3 (1073) 275 69.8 3.8e-11
XP_011537894 (OMIM: 609248) PREDICTED: probable E3 (1081) 275 69.8 3.8e-11
XP_016878186 (OMIM: 176270,227220,605837,615516) P (2556) 271 69.1 1.5e-10
XP_016878187 (OMIM: 176270,227220,605837,615516) P (2556) 271 69.1 1.5e-10
XP_011520435 (OMIM: 176270,227220,605837,615516) P (3749) 271 69.1 2.1e-10
XP_011520433 (OMIM: 176270,227220,605837,615516) P (4673) 271 69.2 2.5e-10
XP_006720790 (OMIM: 176270,227220,605837,615516) P (4748) 271 69.2 2.6e-10
XP_005268333 (OMIM: 176270,227220,605837,615516) P (4796) 271 69.2 2.6e-10
XP_016878184 (OMIM: 176270,227220,605837,615516) P (4796) 271 69.2 2.6e-10
XP_016878185 (OMIM: 176270,227220,605837,615516) P (4796) 271 69.2 2.6e-10
XP_006720789 (OMIM: 176270,227220,605837,615516) P (4829) 271 69.2 2.6e-10
NP_004658 (OMIM: 176270,227220,605837,615516) E3 u (4834) 271 69.2 2.6e-10
NP_001158608 (OMIM: 609249) probable E3 ubiquitin- ( 986) 261 66.7 3e-10
>>NP_001260 (OMIM: 179710) regulator of chromosome conde (421 aa)
initn: 2822 init1: 2822 opt: 2822 Z-score: 3339.1 bits: 626.9 E(85289): 3e-179
Smith-Waterman score: 2822; 100.0% identity (100.0% similar) in 421 aa overlap (1-421:1-421)
10 20 30 40 50 60
pF1KB3 MSPKRIAKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPKRIAKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 TKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ
370 380 390 400 410 420
pF1KB3 S
:
NP_001 S
>>NP_001041664 (OMIM: 179710) regulator of chromosome co (421 aa)
initn: 2822 init1: 2822 opt: 2822 Z-score: 3339.1 bits: 626.9 E(85289): 3e-179
Smith-Waterman score: 2822; 100.0% identity (100.0% similar) in 421 aa overlap (1-421:1-421)
10 20 30 40 50 60
pF1KB3 MSPKRIAKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPKRIAKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 ALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 TKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ
370 380 390 400 410 420
pF1KB3 S
:
NP_001 S
>>NP_001041660 (OMIM: 179710) regulator of chromosome co (438 aa)
initn: 2682 init1: 2682 opt: 2695 Z-score: 3188.7 bits: 599.1 E(85289): 7.1e-171
Smith-Waterman score: 2778; 96.1% identity (96.1% similar) in 438 aa overlap (1-421:1-438)
10 20 30 40
pF1KB3 MSPKRIAKRRSPPADAIPKSKKVK-----------------VSHRSHSTEPGLVLTLGQG
:::::::::::::::::::::::: :::::::::::::::::::
NP_001 MSPKRIAKRRSPPADAIPKSKKVKDTRAAASRRVPGARSCQVSHRSHSTEPGLVLTLGQG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 DVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 SVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSM
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 VPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 LVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIP
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB3 QNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB3 LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLS
370 380 390 400 410 420
410 420
pF1KB3 VSSGGQHTVLLVKDKEQS
::::::::::::::::::
NP_001 VSSGGQHTVLLVKDKEQS
430
>>NP_001041659 (OMIM: 179710) regulator of chromosome co (452 aa)
initn: 2808 init1: 2665 opt: 2676 Z-score: 3166.0 bits: 594.9 E(85289): 1.3e-169
Smith-Waterman score: 2750; 93.1% identity (93.1% similar) in 452 aa overlap (1-421:1-452)
10 20
pF1KB3 MSPKRIAKRRSPPADAIPKSKKVK-------------------------------VSHRS
:::::::::::::::::::::::: :::::
NP_001 MSPKRIAKRRSPPADAIPKSKKVKDTRAAASRRVPGARSCQGACGPSPPDQKTRPVSHRS
10 20 30 40 50 60
30 40 50 60 70 80
pF1KB3 HSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVY
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB3 SFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDN
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB3 NGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB3 LFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNY
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB3 HQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB3 EGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPV
370 380 390 400 410 420
390 400 410 420
pF1KB3 EMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS
::::::::::::::::::::::::::::::::
NP_001 EMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS
430 440 450
>>NP_061185 (OMIM: 609587) protein RCC2 [Homo sapiens] (522 aa)
initn: 272 init1: 111 opt: 394 Z-score: 466.7 bits: 95.7 E(85289): 3e-19
Smith-Waterman score: 394; 24.8% identity (58.1% similar) in 387 aa overlap (50-421:132-506)
20 30 40 50 60 70
pF1KB3 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMH
::.:. .. :... .: . . . :
NP_061 CKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRYGCLAGVRVRTVVSGSCAAH
110 120 130 140 150 160
80 90 100 110 120 130
pF1KB3 TVCLSKSGQVYSFGCNDEGALGR-DTS-VEGSEMVPGKVELQEKVVQVSAGDSHTAALTD
.. .. :...:.: :..: ::. ::. ::. ... : .: .:... : .:: :::.
NP_061 SLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLS--HEVIVSAACGRNHTLALTE
170 180 190 200 210
140 150 160 170 180 190
pF1KB3 DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLD-VPVVKVASGNDHLVMLTADGDLYT
: :: .: ... : .:: . :.:.. . :..:.: : . ... :.::.
NP_061 TGSVFAFG--ENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEFSMIMDCKGNLYS
220 230 240 250 260 270
200 210 220 230 240
pF1KB3 LGCGEQGQLGRVPE-LFANRGGRQGLERLLVPKCVML---KSRGSR----GHVRFQDAFC
.:: : ::::. . : :. : . :::. : . :.. .. .: .:. :
NP_061 FGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQILPVPNVVVRDVAC
280 290 300 310 320 330
250 260 270 280 290 300
pF1KB3 GAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTV
:: :.... . .:...:...: .:: .. ..:. . : .. . .: .
NP_061 GANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFDFPGRGASQIYAGYTCSF
340 350 360 370 380 390
310 320 330 340 350 360
pF1KB3 CMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGR
.. : . : .. .: : : .. : . . :.::: : . :. :
NP_061 AVSEVGGLFFWGATNTSR-------ESTMYPKAVQDLCGWRIRSLACGKS-SIIVAADES
400 410 420 430 440
370 380 390 400 410 420
pF1KB3 VFAWGMGTNY-QLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS
...:: . .. .:: :. . : . . : :.. .:. : .:......:. ..
NP_061 TISWGPSPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMGYSHSLVIARDESETEKE
450 460 470 480 490 500
NP_061 KIKKLPEYNPRTL
510 520
>>NP_001129676 (OMIM: 609587) protein RCC2 [Homo sapiens (522 aa)
initn: 272 init1: 111 opt: 394 Z-score: 466.7 bits: 95.7 E(85289): 3e-19
Smith-Waterman score: 394; 24.8% identity (58.1% similar) in 387 aa overlap (50-421:132-506)
20 30 40 50 60 70
pF1KB3 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMH
::.:. .. :... .: . . . :
NP_001 CKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRYGCLAGVRVRTVVSGSCAAH
110 120 130 140 150 160
80 90 100 110 120 130
pF1KB3 TVCLSKSGQVYSFGCNDEGALGR-DTS-VEGSEMVPGKVELQEKVVQVSAGDSHTAALTD
.. .. :...:.: :..: ::. ::. ::. ... : .: .:... : .:: :::.
NP_001 SLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLS--HEVIVSAACGRNHTLALTE
170 180 190 200 210
140 150 160 170 180 190
pF1KB3 DGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLD-VPVVKVASGNDHLVMLTADGDLYT
: :: .: ... : .:: . :.:.. . :..:.: : . ... :.::.
NP_001 TGSVFAFG--ENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEFSMIMDCKGNLYS
220 230 240 250 260 270
200 210 220 230 240
pF1KB3 LGCGEQGQLGRVPE-LFANRGGRQGLERLLVPKCVML---KSRGSR----GHVRFQDAFC
.:: : ::::. . : :. : . :::. : . :.. .. .: .:. :
NP_001 FGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQILPVPNVVVRDVAC
280 290 300 310 320 330
250 260 270 280 290 300
pF1KB3 GAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTV
:: :.... . .:...:...: .:: .. ..:. . : .. . .: .
NP_001 GANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFDFPGRGASQIYAGYTCSF
340 350 360 370 380 390
310 320 330 340 350 360
pF1KB3 CMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGR
.. : . : .. .: : : .. : . . :.::: : . :. :
NP_001 AVSEVGGLFFWGATNTSR-------ESTMYPKAVQDLCGWRIRSLACGKS-SIIVAADES
400 410 420 430 440
370 380 390 400 410 420
pF1KB3 VFAWGMGTNY-QLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS
...:: . .. .:: :. . : . . : :.. .:. : .:......:. ..
NP_001 TISWGPSPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMGYSHSLVIARDESETEKE
450 460 470 480 490 500
NP_001 KIKKLPEYNPRTL
510 520
>>NP_001305434 (OMIM: 605200) probable E3 ubiquitin-prot (368 aa)
initn: 268 init1: 191 opt: 310 Z-score: 369.8 bits: 77.2 E(85289): 7.4e-14
Smith-Waterman score: 362; 30.4% identity (57.3% similar) in 286 aa overlap (127-407:92-357)
100 110 120 130 140 150
pF1KB3 GALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLL
:.::. ::.: :..: ::. : : .::.
NP_001 TKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSD--GQLGLM
70 80 90 100 110
160 170 180 190 200 210
pF1KB3 EPMKKSMVPVQVQ-LDVP-VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANR
. :: .: :. ...:. :: : . :.:::...: : . .:::: : : ..
NP_001 TTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKE-FPSQ
120 130 140 150 160 170
220 230 240 250 260 270
pF1KB3 GGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGT
.. : . :. .: : : ::. .::.: : :.:.:..: :::
NP_001 ASPQ-------------RVRSLEGIPLAQVAAGGAH-SFALSLSGAVFGWGMNNAGQLGL
180 190 200 210 220
280 290 300 310 320 330
pF1KB3 PGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE
.. : .. .. :.. : .: :..::. . . : ....: . :.:: .:
NP_001 SDEKDRESPCHVKLLR--TQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDE
230 240 250 260 270 280
340 350 360 370 380 390
pF1KB3 KSIPTLISRL--PAVSSVACGASVGYA-VTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEM
. : . .: :...::: . : : ..: ..:.: :. :::::. .. : .
NP_001 VN-PRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV
290 300 310 320 330 340
400 410 420
pF1KB3 MGKQLENRVVLSVSSGGQHTVLLVKDKEQS
: . ::. .:
NP_001 KGYWAAHSGQLSARAGKNDCLWNLKVF
350 360
>>XP_016871530 (OMIM: 609248) PREDICTED: probable E3 ubi (936 aa)
initn: 308 init1: 155 opt: 311 Z-score: 364.6 bits: 77.6 E(85289): 1.4e-13
Smith-Waterman score: 515; 31.1% identity (60.2% similar) in 367 aa overlap (37-393:1-343)
10 20 30 40 50 60
pF1KB3 AKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLG----ENVMERKKPAL
.: :... :::::: : :.: .: .
XP_016 MLCWGNASFGQLGLGGIDEEIVLEPRKSDF
10 20 30
70 80 90 100 110 120
pF1KB3 VSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ-EKV
: . : .. : ::: . .: ::. :::: : ::.. : . :.: : :. ...
XP_016 F-INKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQV---VALDAQNI
40 50 60 70 80
130 140 150 160 170
pF1KB3 VQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVAS
: :: :..:: ::.: :.:. :: :..: .::. . :: ... :. .:.::
XP_016 VAVSCGEAHTLALNDKGQVYAWGL--DSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVAC
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB3 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH
: : . :. .... : .. :::: ... .: .:: : .. :
XP_016 GYYHSLALSKASEVFCWGQNKYGQLG-----LGTDCKKQTSPQLL--KSLL----G----
150 160 170 180
240 250 260 270 280 290
pF1KB3 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF
. :... :. .:... : ..:.: ... ::: .. ..:. : :.. ... : .
XP_016 IPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIVYI
190 200 210 220 230 240
300 310 320 330 340 350
pF1KB3 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVG
:. ::. . .:: ....: . ::.:: . ..: . : . .: :. .::: .
XP_016 CCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRKVFELMGSIVTEIACGRQHT
250 260 270 280 290 300
360 370 380 390 400 410
pF1KB3 YA-VTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK
: : ..::....:.: : :::::. . :: . :
XP_016 SAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEEYFCVKR
310 320 330 340 350 360
420
pF1KB3 DKEQS
XP_016 IFSGGDQSFSHYSSPQNCGPPDDFRCPNPTKQIWTVNEALIQKWLSYPSGRFPVEIANEI
370 380 390 400 410 420
>>NP_001265114 (OMIM: 609248) probable E3 ubiquitin-prot (979 aa)
initn: 308 init1: 155 opt: 311 Z-score: 364.3 bits: 77.6 E(85289): 1.5e-13
Smith-Waterman score: 515; 31.1% identity (60.2% similar) in 367 aa overlap (37-393:1-343)
10 20 30 40 50 60
pF1KB3 AKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLG----ENVMERKKPAL
.: :... :::::: : :.: .: .
NP_001 MLCWGNASFGQLGLGGIDEEIVLEPRKSDF
10 20 30
70 80 90 100 110 120
pF1KB3 VSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ-EKV
: . : .. : ::: . .: ::. :::: : ::.. : . :.: : :. ...
NP_001 F-INKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQV---VALDAQNI
40 50 60 70 80
130 140 150 160 170
pF1KB3 VQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVAS
: :: :..:: ::.: :.:. :: :..: .::. . :: ... :. .:.::
NP_001 VAVSCGEAHTLALNDKGQVYAWGL--DSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVAC
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB3 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH
: : . :. .... : .. :::: ... .: .:: : .. :
NP_001 GYYHSLALSKASEVFCWGQNKYGQLG-----LGTDCKKQTSPQLL--KSLL----G----
150 160 170 180
240 250 260 270 280 290
pF1KB3 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF
. :... :. .:... : ..:.: ... ::: .. ..:. : :.. ... : .
NP_001 IPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIVYI
190 200 210 220 230 240
300 310 320 330 340 350
pF1KB3 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVG
:. ::. . .:: ....: . ::.:: . ..: . : . .: :. .::: .
NP_001 CCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRKVFELMGSIVTEIACGRQHT
250 260 270 280 290 300
360 370 380 390 400 410
pF1KB3 YA-VTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK
: : ..::....:.: : :::::. . :: . :
NP_001 SAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEEYFCVKR
310 320 330 340 350 360
420
pF1KB3 DKEQS
NP_001 IFSGGDQSFSHYSSPQNCGPPDDFRCPNPTKQIWTVNEALIQKWLSYPSGRFPVEIANEI
370 380 390 400 410 420
>>NP_056416 (OMIM: 609248) probable E3 ubiquitin-protein (1049 aa)
initn: 308 init1: 155 opt: 311 Z-score: 363.8 bits: 77.6 E(85289): 1.6e-13
Smith-Waterman score: 515; 31.1% identity (60.2% similar) in 367 aa overlap (37-393:1-343)
10 20 30 40 50 60
pF1KB3 AKRRSPPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLG----ENVMERKKPAL
.: :... :::::: : :.: .: .
NP_056 MLCWGNASFGQLGLGGIDEEIVLEPRKSDF
10 20 30
70 80 90 100 110 120
pF1KB3 VSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ-EKV
: . : .. : ::: . .: ::. :::: : ::.. : . :.: : :. ...
NP_056 F-INKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQV---VALDAQNI
40 50 60 70 80
130 140 150 160 170
pF1KB3 VQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVAS
: :: :..:: ::.: :.:. :: :..: .::. . :: ... :. .:.::
NP_056 VAVSCGEAHTLALNDKGQVYAWGL--DSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVAC
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB3 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH
: : . :. .... : .. :::: ... .: .:: : .. :
NP_056 GYYHSLALSKASEVFCWGQNKYGQLG-----LGTDCKKQTSPQLL--KSLL----G----
150 160 170 180
240 250 260 270 280 290
pF1KB3 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF
. :... :. .:... : ..:.: ... ::: .. ..:. : :.. ... : .
NP_056 IPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLR--SQKIVYI
190 200 210 220 230 240
300 310 320 330 340 350
pF1KB3 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVG
:. ::. . .:: ....: . ::.:: . ..: . : . .: :. .::: .
NP_056 CCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRKVFELMGSIVTEIACGRQHT
250 260 270 280 290 300
360 370 380 390 400 410
pF1KB3 YA-VTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK
: : ..::....:.: : :::::. . :: . :
NP_056 SAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEEYFCVKR
310 320 330 340 350 360
420
pF1KB3 DKEQS
NP_056 IFSGGDQSFSHYSSPQNCGPPDDFRCPNPTKQIWTVNEALIQKWLSYPSGRFPVEIANEI
370 380 390 400 410 420
421 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:09:41 2016 done: Sat Nov 5 12:09:42 2016
Total Scan time: 8.100 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]