Result of FASTA (omim) for
pFN21AB7928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7928, 200 aa
1>>>pF1KB7928 200 - 200 aa - 200 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7106+/-0.000258; mu= 13.8622+/- 0.016
mean_var=89.1171+/-17.620, 0's: 0 Z-trim(121.8): 17 B-trim: 395 in 2/55
Lambda= 0.135861
statistics sampled from 38892 (38911) to 38892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.456), width: 16
Scan time: 6.100
The best scores are: opt bits E(85289)
XP_005262156 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
XP_016884824 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
XP_005262160 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
XP_005262159 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
NP_001305399 (OMIM: 300506) TSC22 domain family pr ( 200) 1327 268.7 4.4e-72
XP_011529186 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
NP_932174 (OMIM: 300506) TSC22 domain family prote ( 200) 1327 268.7 4.4e-72
XP_005262157 (OMIM: 300506) PREDICTED: TSC22 domai ( 200) 1327 268.7 4.4e-72
NP_001305397 (OMIM: 300506) TSC22 domain family pr ( 200) 1327 268.7 4.4e-72
NP_004080 (OMIM: 300506) TSC22 domain family prote ( 134) 591 124.3 8.6e-29
NP_001015881 (OMIM: 300506) TSC22 domain family pr ( 77) 493 104.9 3.4e-23
NP_006013 (OMIM: 607715) TSC22 domain family prote ( 144) 405 87.9 8.6e-18
NP_904358 (OMIM: 607715) TSC22 domain family prote (1073) 404 88.3 4.7e-17
NP_112197 (OMIM: 611914) TSC22 domain family prote ( 395) 344 76.3 7.5e-14
NP_001289972 (OMIM: 611914) TSC22 domain family pr ( 395) 344 76.3 7.5e-14
NP_001230726 (OMIM: 607715) TSC22 domain family pr ( 86) 311 69.3 2e-12
NP_001230727 (OMIM: 607715) TSC22 domain family pr ( 86) 311 69.3 2e-12
>>XP_005262156 (OMIM: 300506) PREDICTED: TSC22 domain fa (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1415.1 bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
XP_005 PEEPAPESPQVPEAPGGSAV
190 200
>>XP_016884824 (OMIM: 300506) PREDICTED: TSC22 domain fa (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1415.1 bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
XP_016 PEEPAPESPQVPEAPGGSAV
190 200
>>XP_005262160 (OMIM: 300506) PREDICTED: TSC22 domain fa (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1415.1 bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
XP_005 PEEPAPESPQVPEAPGGSAV
190 200
>>XP_005262159 (OMIM: 300506) PREDICTED: TSC22 domain fa (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1415.1 bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
XP_005 PEEPAPESPQVPEAPGGSAV
190 200
>>NP_001305399 (OMIM: 300506) TSC22 domain family protei (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1415.1 bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
NP_001 PEEPAPESPQVPEAPGGSAV
190 200
>>XP_011529186 (OMIM: 300506) PREDICTED: TSC22 domain fa (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1415.1 bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
XP_011 PEEPAPESPQVPEAPGGSAV
190 200
>>NP_932174 (OMIM: 300506) TSC22 domain family protein 3 (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1415.1 bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
NP_932 PEEPAPESPQVPEAPGGSAV
190 200
>>XP_005262157 (OMIM: 300506) PREDICTED: TSC22 domain fa (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1415.1 bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
XP_005 PEEPAPESPQVPEAPGGSAV
190 200
>>NP_001305397 (OMIM: 300506) TSC22 domain family protei (200 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1415.1 bits: 268.7 E(85289): 4.4e-72
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB7 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQSKLDCRSPVGLDCCNCCLDLAHRSGLQRGSSGENNNPGSPTVSNFRQLQEKLVFENL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTDKLNSIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQAMDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLS
130 140 150 160 170 180
190 200
pF1KB7 PEEPAPESPQVPEAPGGSAV
::::::::::::::::::::
NP_001 PEEPAPESPQVPEAPGGSAV
190 200
>>NP_004080 (OMIM: 300506) TSC22 domain family protein 3 (134 aa)
initn: 591 init1: 591 opt: 591 Z-score: 637.9 bits: 124.3 E(85289): 8.6e-29
Smith-Waterman score: 591; 98.9% identity (100.0% similar) in 95 aa overlap (106-200:40-134)
80 90 100 110 120 130
pF1KB7 PVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVAIDNKIEQAMDLVKNHLMYAV
.:::::::::::::::::::::::::::::
NP_004 MEVAVYQLHNFSISFFSSLLGGDVVSVKLDNSASGASVVAIDNKIEQAMDLVKNHLMYAV
10 20 30 40 50 60
140 150 160 170 180 190
pF1KB7 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPEAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPEAP
70 80 90 100 110 120
200
pF1KB7 GGSAV
:::::
NP_004 GGSAV
130
200 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:11:08 2016 done: Sat Nov 5 10:11:09 2016
Total Scan time: 6.100 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]