Result of FASTA (ccds) for pFN21AB9851
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9851, 380 aa
  1>>>pF1KB9851 380 - 380 aa - 380 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7158+/-0.000847; mu= 16.0503+/- 0.051
 mean_var=84.7201+/-16.819, 0's: 0 Z-trim(107.8): 12  B-trim: 0 in 0/52
 Lambda= 0.139342
 statistics sampled from 9824 (9829) to 9824 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.302), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS8010.1 FEN1 gene_id:2237|Hs108|chr11           ( 380) 2484 509.0 2.8e-144
CCDS44336.1 EXO1 gene_id:9156|Hs108|chr1           ( 803)  371 84.4 3.8e-16
CCDS1620.1 EXO1 gene_id:9156|Hs108|chr1            ( 846)  371 84.5 3.9e-16


>>CCDS8010.1 FEN1 gene_id:2237|Hs108|chr11                (380 aa)
 initn: 2484 init1: 2484 opt: 2484  Z-score: 2703.7  bits: 509.0 E(32554): 2.8e-144
Smith-Waterman score: 2484; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)

               10        20        30        40        50        60
pF1KB9 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 TSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 TSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 QEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 IGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVELKWSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 IGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVELKWSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 PNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEP
              310       320       330       340       350       360

              370       380
pF1KB9 KGSTKKKAKTGAAGKFKRGK
       ::::::::::::::::::::
CCDS80 KGSTKKKAKTGAAGKFKRGK
              370       380

>>CCDS44336.1 EXO1 gene_id:9156|Hs108|chr1                (803 aa)
 initn: 255 init1: 221 opt: 371  Z-score: 403.4  bits: 84.4 E(32554): 3.8e-16
Smith-Waterman score: 371; 29.6% identity (59.1% similar) in 301 aa overlap (1-291:1-290)

               10        20        30        40        50        60
pF1KB9 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET
       :::::: ..: .    : .   ...: :. ::.:.   ...  ::  .     .  .:: 
CCDS44 MGIQGLLQFIKE----ASEPIHVRKYKGQVVAVDTYCWLHKGAIACAE-----KLAKGEP
               10            20        30        40             50 

               70         80         90       100       110        
pF1KB9 TSHLMGMFYRTIRMM-ENGIKPVYVFDGKP-PQLKSGELAKRSERRAEAEKQLQQAQAAG
       :.. .:. .. . :.  .::::. ::::   :. :  : ..: .:.:.  :  :  . . 
CCDS44 TDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGK
              60        70        80        90       100       110 

      120       130       140       150       160       170        
pF1KB9 AEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATE
       . .  : :: : ...:.    .  .    .:.  : :: ::.:. : : ::: : :  ::
CCDS44 VSEARECFT-RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITE
             120        130       140       150       160       170

      180        190       200       210       220       230       
pF1KB9 DMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCES
       : : :.:: . :...    ... ..   .. . : : .. ...:.:  .::: : ::  :
CCDS44 DSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSS
              180       190       200        210       220         

       240       250         260          270         280       290
pF1KB9 IRGIGPKRAVDLIQ--KHKSIEEIVRRLD---PNKYPVPENWLHK--EAHQLFLEPEVLD
       .::::  .:  ...  .. .: ......      .  :::....   .:.. ::   :.:
CCDS44 LRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFD
     230       240       250       260       270       280         

              300       310       320       330       340       350
pF1KB9 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSL
       :                                                           
CCDS44 PIKRKLIPLNAYEDDVDPETLSYAGQYVDDSIALQIALGNKDINTFEQIDDYNPDTAMPA
     290       300       310       320       330       340         

>>CCDS1620.1 EXO1 gene_id:9156|Hs108|chr1                 (846 aa)
 initn: 255 init1: 221 opt: 371  Z-score: 403.1  bits: 84.5 E(32554): 3.9e-16
Smith-Waterman score: 371; 29.6% identity (59.1% similar) in 301 aa overlap (1-291:1-290)

               10        20        30        40        50        60
pF1KB9 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET
       :::::: ..: .    : .   ...: :. ::.:.   ...  ::  .     .  .:: 
CCDS16 MGIQGLLQFIKE----ASEPIHVRKYKGQVVAVDTYCWLHKGAIACAE-----KLAKGEP
               10            20        30        40             50 

               70         80         90       100       110        
pF1KB9 TSHLMGMFYRTIRMM-ENGIKPVYVFDGKP-PQLKSGELAKRSERRAEAEKQLQQAQAAG
       :.. .:. .. . :.  .::::. ::::   :. :  : ..: .:.:.  :  :  . . 
CCDS16 TDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGK
              60        70        80        90       100       110 

      120       130       140       150       160       170        
pF1KB9 AEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATE
       . .  : :: : ...:.    .  .    .:.  : :: ::.:. : : ::: : :  ::
CCDS16 VSEARECFT-RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITE
             120        130       140       150       160       170

      180        190       200       210       220       230       
pF1KB9 DMDCLTFG-SPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCES
       : : :.:: . :...    ... ..   .. . : : .. ...:.:  .::: : ::  :
CCDS16 DSDLLAFGCKKVILKMDQFGNGLEIDQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSS
              180       190       200        210       220         

       240       250         260          270         280       290
pF1KB9 IRGIGPKRAVDLIQ--KHKSIEEIVRRLD---PNKYPVPENWLHK--EAHQLFLEPEVLD
       .::::  .:  ...  .. .: ......      .  :::....   .:.. ::   :.:
CCDS16 LRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFD
     230       240       250       260       270       280         

              300       310       320       330       340       350
pF1KB9 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSL
       :                                                           
CCDS16 PIKRKLIPLNAYEDDVDPETLSYAGQYVDDSIALQIALGNKDINTFEQIDDYNPDTAMPA
     290       300       310       320       330       340         




380 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:46:16 2016 done: Fri Nov  4 19:46:16 2016
 Total Scan time:  2.440 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com