hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080304/iprscan-20080304-20292202/chunk_1/iprscan-20080304-20292202.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB9849 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00001.12.fs 7 transmembrane receptor (rhodopsin family) 191.6 8.7e-64 1 PF00001.12.ls 7 transmembrane receptor (rhodopsin family) 193.5 4.7e-55 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00001.12.fs 1/1 50 306 .. 1 272 [] 191.6 8.7e-64 PF00001.12.ls 1/1 50 306 .. 1 272 [] 193.5 4.7e-55 Alignments of top-scoring domains: PF00001.12.fs: domain 1 of 1, from 50 to 306: score 191.6, E = 8.7e-64 *->GNlLVilvilrtkklr..tptnifilNLAvADLLflltlppwalyyl N+++++++l+ +l++ +++ +++++LAv+D L++++lp+ ++yy+ pF1KB9849 50 LNAVALYIFLC--RLKtwNASTTYMFHLAVSDALYAASLPLLVYYYA 94 vggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrr g +Wpf+++lCklv +l+++n+y+Sil+Lt+IS+ R+l + +Plr+ r pF1KB9849 95 RG-DHWPFSTVLCKLVRFLFYTNLYCSILFLTCISVHRCLGVLRPLRSLR 143 rrtsprrAkvvillvWvlalllslPpllfswvktveegngv.vnvttCli + + r A+ v ++vWvl l++ P l+f v+t++ g++v++ +t+ + pF1KB9849 144 WGR-ARYARRVAGAVWVLVLACQAPVLYF--VTTSARGGRVtCHDTSAPE 190 dfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkra.. f + +y + + + F +P+ vilvcY +++r+l k a + pF1KB9849 191 LFSRFV---------AYSSVMLGLLFAVPFAVILVCYVLMARRLLKPAyg 231 ....rkgaskkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.ls ++++ + +++rk ++t++vv+ vF+lC+lP++++ l + +++ pF1KB9849 232 tsggLP-------RAKRKSVRTIAVVLAVFALCFLPFHVTRTLYYSFrSL 274 iimsssCelervlptallvtlwLayvNsclNPiIY<-* +sC + ++ a+ vt+ La +Nscl+P++Y pF1KB9849 275 ---DLSCHTLNAINMAYKVTRPLASANSCLDPVLY 306 PF00001.12.ls: domain 1 of 1, from 50 to 306: score 193.5, E = 4.7e-55 *->GNlLVilvilrtkklr..tptnifilNLAvADLLflltlppwalyyl N+++++++l+ +l++ +++ +++++LAv+D L++++lp+ ++yy+ pF1KB9849 50 LNAVALYIFLC--RLKtwNASTTYMFHLAVSDALYAASLPLLVYYYA 94 vggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrr g +Wpf+++lCklv +l+++n+y+Sil+Lt+IS+ R+l + +Plr+ r pF1KB9849 95 RG-DHWPFSTVLCKLVRFLFYTNLYCSILFLTCISVHRCLGVLRPLRSLR 143 rrtsprrAkvvillvWvlalllslPpllfswvktveegngv.vnvttCli + + r A+ v ++vWvl l++ P l+f v+t++ g++v++ +t+ + pF1KB9849 144 WGR-ARYARRVAGAVWVLVLACQAPVLYF--VTTSARGGRVtCHDTSAPE 190 dfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkra.. f + +y + + + F +P+ vilvcY +++r+l k a + pF1KB9849 191 LFSRFV---------AYSSVMLGLLFAVPFAVILVCYVLMARRLLKPAyg 231 ....rkgaskkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.ls ++++ + +++rk ++t++vv+ vF+lC+lP++++ l + +++ pF1KB9849 232 tsggLP-------RAKRKSVRTIAVVLAVFALCFLPFHVTRTLYYSFrSL 274 iimsssCelervlptallvtlwLayvNsclNPiIY<-* +sC + ++ a+ vt+ La +Nscl+P++Y pF1KB9849 275 ---DLSCHTLNAINMAYKVTRPLASANSCLDPVLY 306 //