hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20080304/iprscan-20080304-20292202/chunk_1/iprscan-20080304-20292202.nocrc
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Query sequence: pF1KB9849
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family) 191.6 8.7e-64 1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family) 193.5 4.7e-55 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00001.12.fs 1/1 50 306 .. 1 272 [] 191.6 8.7e-64
PF00001.12.ls 1/1 50 306 .. 1 272 [] 193.5 4.7e-55
Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 50 to 306: score 191.6, E = 8.7e-64
*->GNlLVilvilrtkklr..tptnifilNLAvADLLflltlppwalyyl
N+++++++l+ +l++ +++ +++++LAv+D L++++lp+ ++yy+
pF1KB9849 50 LNAVALYIFLC--RLKtwNASTTYMFHLAVSDALYAASLPLLVYYYA 94
vggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrr
g +Wpf+++lCklv +l+++n+y+Sil+Lt+IS+ R+l + +Plr+ r
pF1KB9849 95 RG-DHWPFSTVLCKLVRFLFYTNLYCSILFLTCISVHRCLGVLRPLRSLR 143
rrtsprrAkvvillvWvlalllslPpllfswvktveegngv.vnvttCli
+ + r A+ v ++vWvl l++ P l+f v+t++ g++v++ +t+ +
pF1KB9849 144 WGR-ARYARRVAGAVWVLVLACQAPVLYF--VTTSARGGRVtCHDTSAPE 190
dfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkra..
f + +y + + + F +P+ vilvcY +++r+l k a +
pF1KB9849 191 LFSRFV---------AYSSVMLGLLFAVPFAVILVCYVLMARRLLKPAyg 231
....rkgaskkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.ls
++++ + +++rk ++t++vv+ vF+lC+lP++++ l + +++
pF1KB9849 232 tsggLP-------RAKRKSVRTIAVVLAVFALCFLPFHVTRTLYYSFrSL 274
iimsssCelervlptallvtlwLayvNsclNPiIY<-*
+sC + ++ a+ vt+ La +Nscl+P++Y
pF1KB9849 275 ---DLSCHTLNAINMAYKVTRPLASANSCLDPVLY 306
PF00001.12.ls: domain 1 of 1, from 50 to 306: score 193.5, E = 4.7e-55
*->GNlLVilvilrtkklr..tptnifilNLAvADLLflltlppwalyyl
N+++++++l+ +l++ +++ +++++LAv+D L++++lp+ ++yy+
pF1KB9849 50 LNAVALYIFLC--RLKtwNASTTYMFHLAVSDALYAASLPLLVYYYA 94
vggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrr
g +Wpf+++lCklv +l+++n+y+Sil+Lt+IS+ R+l + +Plr+ r
pF1KB9849 95 RG-DHWPFSTVLCKLVRFLFYTNLYCSILFLTCISVHRCLGVLRPLRSLR 143
rrtsprrAkvvillvWvlalllslPpllfswvktveegngv.vnvttCli
+ + r A+ v ++vWvl l++ P l+f v+t++ g++v++ +t+ +
pF1KB9849 144 WGR-ARYARRVAGAVWVLVLACQAPVLYF--VTTSARGGRVtCHDTSAPE 190
dfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkra..
f + +y + + + F +P+ vilvcY +++r+l k a +
pF1KB9849 191 LFSRFV---------AYSSVMLGLLFAVPFAVILVCYVLMARRLLKPAyg 231
....rkgaskkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.ls
++++ + +++rk ++t++vv+ vF+lC+lP++++ l + +++
pF1KB9849 232 tsggLP-------RAKRKSVRTIAVVLAVFALCFLPFHVTRTLYYSFrSL 274
iimsssCelervlptallvtlwLayvNsclNPiIY<-*
+sC + ++ a+ vt+ La +Nscl+P++Y
pF1KB9849 275 ---DLSCHTLNAINMAYKVTRPLASANSCLDPVLY 306
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