Result of FASTA (omim) for pFN21AB9840
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9840, 356 aa
  1>>>pF1KB9840 356 - 356 aa - 356 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1497+/-0.00038; mu= 12.5522+/- 0.024
 mean_var=89.4807+/-17.965, 0's: 0 Z-trim(113.5): 140  B-trim: 179 in 1/58
 Lambda= 0.135584
 statistics sampled from 22747 (22898) to 22747 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.268), width:  16
 Scan time:  8.190

The best scores are:                                      opt bits E(85289)
NP_006187 (OMIM: 601209) poly(rC)-binding protein  ( 356) 2318 463.6  3e-130
NP_001122383 (OMIM: 601210) poly(rC)-binding prote ( 365) 1889 379.7 5.7e-105
NP_114366 (OMIM: 601210) poly(rC)-binding protein  ( 362) 1881 378.1 1.7e-104
NP_001122384 (OMIM: 601210) poly(rC)-binding prote ( 361) 1864 374.8 1.7e-103
NP_005007 (OMIM: 601210) poly(rC)-binding protein  ( 366) 1515 306.5   6e-83
NP_001122385 (OMIM: 601210) poly(rC)-binding prote ( 335) 1143 233.7 4.5e-61
NP_001122386 (OMIM: 601210) poly(rC)-binding prote ( 318) 1111 227.5 3.3e-59
NP_001092090 (OMIM: 601210) poly(rC)-binding prote ( 331) 1111 227.5 3.4e-59
NP_065389 (OMIM: 608502) poly(rC)-binding protein  ( 371) 1008 207.3 4.3e-53
NP_001123613 (OMIM: 608502) poly(rC)-binding prote ( 345)  918 189.7 8.1e-48
XP_016862407 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323)  797 166.0   1e-40
XP_016862408 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323)  797 166.0   1e-40
XP_016862406 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323)  797 166.0   1e-40
XP_006713334 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 346)  797 166.1 1.1e-40
XP_006713331 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403)  797 166.1 1.2e-40
XP_006713332 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403)  797 166.1 1.2e-40
XP_005265388 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403)  797 166.1 1.2e-40
NP_127501 (OMIM: 608503) poly(rC)-binding protein  ( 403)  797 166.1 1.2e-40
NP_127503 (OMIM: 608503) poly(rC)-binding protein  ( 403)  797 166.1 1.2e-40
NP_001167571 (OMIM: 608503) poly(rC)-binding prote ( 403)  797 166.1 1.2e-40
XP_016862405 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426)  797 166.1 1.3e-40
XP_005265387 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426)  797 166.1 1.3e-40
XP_016862409 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 280)  552 118.1 2.4e-26
NP_065151 (OMIM: 608503) poly(rC)-binding protein  ( 360)  552 118.1   3e-26
XP_006713333 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 360)  552 118.1   3e-26
XP_005265389 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 383)  552 118.2 3.2e-26
XP_006713541 (OMIM: 125853,608289) PREDICTED: insu ( 300)  262 61.4 3.1e-09
XP_006713540 (OMIM: 125853,608289) PREDICTED: insu ( 343)  262 61.4 3.4e-09
NP_001305115 (OMIM: 600712,616580) heterogeneous n ( 439)  232 55.6 2.5e-07
XP_016870158 (OMIM: 600712,616580) PREDICTED: hete ( 439)  232 55.6 2.5e-07
XP_011516918 (OMIM: 600712,616580) PREDICTED: hete ( 439)  232 55.6 2.5e-07
NP_001305117 (OMIM: 600712,616580) heterogeneous n ( 463)  232 55.6 2.6e-07
NP_112552 (OMIM: 600712,616580) heterogeneous nucl ( 463)  232 55.6 2.6e-07
XP_016870157 (OMIM: 600712,616580) PREDICTED: hete ( 463)  232 55.6 2.6e-07
XP_005252020 (OMIM: 600712,616580) PREDICTED: hete ( 440)  227 54.6 4.9e-07
XP_005252022 (OMIM: 600712,616580) PREDICTED: hete ( 440)  227 54.6 4.9e-07
NP_001305116 (OMIM: 600712,616580) heterogeneous n ( 440)  227 54.6 4.9e-07
NP_002131 (OMIM: 600712,616580) heterogeneous nucl ( 464)  227 54.6 5.1e-07
XP_005252017 (OMIM: 600712,616580) PREDICTED: hete ( 464)  227 54.6 5.1e-07
NP_112553 (OMIM: 600712,616580) heterogeneous nucl ( 464)  227 54.6 5.1e-07
XP_016870761 (OMIM: 603536) PREDICTED: far upstrea ( 377)  203 49.9 1.1e-05
XP_016870760 (OMIM: 603536) PREDICTED: far upstrea ( 377)  203 49.9 1.1e-05
XP_016870759 (OMIM: 603536) PREDICTED: far upstrea ( 377)  203 49.9 1.1e-05
XP_006717376 (OMIM: 603536) PREDICTED: far upstrea ( 485)  203 49.9 1.4e-05
XP_011517476 (OMIM: 603536) PREDICTED: far upstrea ( 485)  203 49.9 1.4e-05
XP_011517475 (OMIM: 603536) PREDICTED: far upstrea ( 499)  203 49.9 1.4e-05
NP_003925 (OMIM: 603536) far upstream element-bind ( 572)  203 50.0 1.6e-05
XP_016870762 (OMIM: 603536) PREDICTED: far upstrea ( 353)  197 48.7 2.4e-05
XP_016870758 (OMIM: 603536) PREDICTED: far upstrea ( 461)  197 48.8 2.9e-05
XP_005272289 (OMIM: 603536) PREDICTED: far upstrea ( 548)  197 48.8 3.4e-05


>>NP_006187 (OMIM: 601209) poly(rC)-binding protein 1 [H  (356 aa)
 initn: 2318 init1: 2318 opt: 2318  Z-score: 2459.3  bits: 463.6 E(85289): 3e-130
Smith-Waterman score: 2318; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGA
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KB9 NINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
              310       320       330       340       350      

>>NP_001122383 (OMIM: 601210) poly(rC)-binding protein 2  (365 aa)
 initn: 1881 init1: 1052 opt: 1889  Z-score: 2005.6  bits: 379.7 E(85289): 5.7e-105
Smith-Waterman score: 1896; 82.8% identity (91.6% similar) in 367 aa overlap (1-356:1-365)

               10        20        30        40        50        60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
       ::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
       :.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
       ::::::::::::::::::::::::::::::.:::. :::::::.::::::::::   : :
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV-T
              130       140       150       160       170          

              190       200          210             220       230 
pF1KB9 IPYQPMPASSPVICAGGQDRCS---DAAGYPHATH------DLEGPPLDAYSIQGQHTIS
       :::.: :.::::: :::::: :   :.:..::.:       :::::::.::.::::..: 
NP_001 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
     180       190       200       210       220       230         

             240       250       260       270       280        290
pF1KB9 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
         ::.::.:.: ::::: : ::.:::.::.::::::::::. ::::.::: :::::::.:
NP_001 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWG-LDASAQTTSHELTIPNDL
     240       250       260       270       280        290        

              300       310       320       330       340       350
pF1KB9 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
       ::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
NP_001 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
      300       310       320       330       340       350        

              
pF1KB9 KG-MGCS
        : :: :
NP_001 TGGMGSS
      360     

>>NP_114366 (OMIM: 601210) poly(rC)-binding protein 2 is  (362 aa)
 initn: 1970 init1: 1017 opt: 1881  Z-score: 1997.2  bits: 378.1 E(85289): 1.7e-104
Smith-Waterman score: 1881; 81.7% identity (91.3% similar) in 367 aa overlap (1-356:1-362)

               10        20        30        40        50        60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
       ::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_114 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
       :.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_114 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
       ::::::::::::::::::::::::::::::.:::. :::::::.::::.    :.:  .:
NP_114 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
              130       140       150       160          170       

              190       200          210             220       230 
pF1KB9 IPYQPMPASSPVICAGGQDRCS---DAAGYPHATH------DLEGPPLDAYSIQGQHTIS
       :::.: :.::::: :::::: :   :.:..::.:       :::::::.::.::::..: 
NP_114 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
         180       190       200       210       220       230     

             240       250       260       270       280        290
pF1KB9 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
         ::.::.:.: ::::: : ::.:::.::.:::::::::::.::::.::: :::::::.:
NP_114 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDL
         240       250       260       270       280       290     

              300       310       320       330       340       350
pF1KB9 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
       ::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
NP_114 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
         300       310       320       330       340       350     

              
pF1KB9 KG-MGCS
        : :: :
NP_114 TGGMGSS
         360  

>>NP_001122384 (OMIM: 601210) poly(rC)-binding protein 2  (361 aa)
 initn: 1846 init1: 1017 opt: 1864  Z-score: 1979.2  bits: 374.8 E(85289): 1.7e-103
Smith-Waterman score: 1864; 81.5% identity (91.0% similar) in 367 aa overlap (1-356:1-361)

               10        20        30        40        50        60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
       ::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
       :.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
       ::::::::::::::::::::::::::::::.:::. :::::::.::::.    :.:  .:
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
              130       140       150       160          170       

              190       200          210             220       230 
pF1KB9 IPYQPMPASSPVICAGGQDRCS---DAAGYPHATH------DLEGPPLDAYSIQGQHTIS
       :::.: :.::::: :::::: :   :.:..::.:       :::::::.::.::::..: 
NP_001 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
         180       190       200       210       220       230     

             240       250       260       270       280        290
pF1KB9 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
         ::.::.:.: ::::: : ::.:::.::.::::::::::. ::::.::: :::::::.:
NP_001 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWG-LDASAQTTSHELTIPNDL
         240       250       260       270        280       290    

              300       310       320       330       340       350
pF1KB9 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
       ::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
NP_001 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
          300       310       320       330       340       350    

              
pF1KB9 KG-MGCS
        : :: :
NP_001 TGGMGSS
          360 

>>NP_005007 (OMIM: 601210) poly(rC)-binding protein 2 is  (366 aa)
 initn: 1895 init1: 1052 opt: 1515  Z-score: 1610.2  bits: 306.5 E(85289): 6e-83
Smith-Waterman score: 1913; 83.1% identity (91.8% similar) in 367 aa overlap (1-356:1-366)

               10        20        30        40        50        60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
       ::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_005 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
       :.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_005 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
       ::::::::::::::::::::::::::::::.:::. :::::::.::::::::::   : :
NP_005 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV-T
              130       140       150       160       170          

              190       200          210             220       230 
pF1KB9 IPYQPMPASSPVICAGGQDRCS---DAAGYPHATH------DLEGPPLDAYSIQGQHTIS
       :::.: :.::::: :::::: :   :.:..::.:       :::::::.::.::::..: 
NP_005 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
     180       190       200       210       220       230         

             240       250       260       270       280        290
pF1KB9 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
         ::.::.:.: ::::: : ::.:::.::.:::::::::::.::::.::: :::::::.:
NP_005 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDL
     240       250       260       270       280       290         

              300       310       320       330       340       350
pF1KB9 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
       ::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
NP_005 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
     300       310       320       330       340       350         

              
pF1KB9 KG-MGCS
        : :: :
NP_005 TGGMGSS
     360      

>>NP_001122385 (OMIM: 601210) poly(rC)-binding protein 2  (335 aa)
 initn: 1823 init1: 1052 opt: 1143  Z-score: 1217.5  bits: 233.7 E(85289): 4.5e-61
Smith-Waterman score: 1785; 81.0% identity (88.5% similar) in 358 aa overlap (1-356:1-335)

               10        20        30        40        50        60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
       ::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
       :.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
       ::::::::::::::::::::::::::::::.:::. :::::::.::::::::::   : :
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV-T
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB9 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
       :::.: :.::::: ::::                      ::.::::..:   ::.::.:
NP_001 IPYRPKPSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQ
     180       190                             200       210       

              250       260       270       280        290         
pF1KB9 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQG
       .: ::::: : ::.:::.::.:::::::::::.::::.::: :::::::.::::::::::
NP_001 LAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQG
       220       230       240       250       260       270       

     300       310       320       330       340       350       
pF1KB9 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKG-MGCS
       :.:::::::::::::::::::::. ::::::::::::::::::::.::::: : :: :
NP_001 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
       280       290       300       310       320       330     

>>NP_001122386 (OMIM: 601210) poly(rC)-binding protein 2  (318 aa)
 initn: 1746 init1: 1017 opt: 1111  Z-score: 1184.0  bits: 227.5 E(85289): 3.3e-59
Smith-Waterman score: 1629; 76.3% identity (84.4% similar) in 358 aa overlap (1-356:1-318)

               10        20        30        40        50        60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
       ::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
       :.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
       ::::::::::::::::::::::::::::::.:::. :::::::.::::.    :.:  .:
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
              130       140       150       160          170       

              190       200       210       220       230       240
pF1KB9 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
       :::.: :.::::: ::::                      ::.::::..:   ::.::.:
NP_001 IPYRPKPSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQ
         180       190                             200       210   

              250       260       270       280        290         
pF1KB9 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQG
       .: ::::: : ::.:::.             :.::::.::: :::::::.::::::::::
NP_001 LAMQQSHFPMTHGNTGFS-------------AGLDASAQTTSHELTIPNDLIGCIIGRQG
           220       230                    240       250       260

     300       310       320       330       340       350       
pF1KB9 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKG-MGCS
       :.:::::::::::::::::::::. ::::::::::::::::::::.::::: : :: :
NP_001 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
              270       280       290       300       310        

>>NP_001092090 (OMIM: 601210) poly(rC)-binding protein 2  (331 aa)
 initn: 1788 init1: 1017 opt: 1111  Z-score: 1183.8  bits: 227.5 E(85289): 3.4e-59
Smith-Waterman score: 1753; 79.6% identity (88.0% similar) in 358 aa overlap (1-356:1-331)

               10        20        30        40        50        60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
       ::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
       :.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
       ::::::::::::::::::::::::::::::.:::. :::::::.::::.    :.:  .:
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
              130       140       150       160          170       

              190       200       210       220       230       240
pF1KB9 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
       :::.: :.::::: ::::                      ::.::::..:   ::.::.:
NP_001 IPYRPKPSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQ
         180       190                             200       210   

              250       260       270       280        290         
pF1KB9 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQG
       .: ::::: : ::.:::.::.:::::::::::.::::.::: :::::::.::::::::::
NP_001 LAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQG
           220       230       240       250       260       270   

     300       310       320       330       340       350       
pF1KB9 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKG-MGCS
       :.:::::::::::::::::::::. ::::::::::::::::::::.::::: : :: :
NP_001 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
           280       290       300       310       320       330 

>>NP_065389 (OMIM: 608502) poly(rC)-binding protein 3 is  (371 aa)
 initn: 1400 init1: 913 opt: 1008  Z-score: 1074.1  bits: 207.3 E(85289): 4.3e-53
Smith-Waterman score: 1421; 66.5% identity (81.0% similar) in 364 aa overlap (1-354:33-369)

                                             10        20        30
pF1KB9                               MDAGVTESGLNVTLTIRLLMHGKEVGSIIG
                                     :.. :.:.::::::::::::::::::::::
NP_065 EGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIG
             10        20        30        40        50        60  

               40        50        60        70        80        90
pF1KB9 KKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNS
       ::::.::..:::::::::::::::::::.:.::::.:::::::::  :.:::: .::.::
NP_065 KKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNS
             70        80        90       100       110       120  

              100       110       120       130       140       150
pF1KB9 TAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG
        :.:.:::::::::::.:::::::::: :::::::::::::::::::::::::::.::.:
NP_065 PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG
            130       140       150       160       170       180  

              160       170       180       190       200       210
pF1KB9 VPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHA
       .:... .::::::.::::.    :.:   ::::.: :::.::: ::::            
NP_065 TPDAIIQCVKQICVVMLES---PPKG--ATIPYRPKPASTPVIFAGGQ------------
            190       200            210       220                 

              220       230        240       250        260        
pF1KB9 THDLEGPPLDAYSIQGQHTIS-PLDLAKLNQVARQQSHFAMM-HGGTGFAGID---SSSP
                 ::.::::..:  : .:.::.:.: ::. :  . . . .: :      :: 
NP_065 ----------AYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSE
                   230       240       250       260       270     

            270        280       290       300       310       320 
pF1KB9 EVK---GYWASLDASTQ-TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEG
       :..   :  ..::::   .::::::::.::::::::::..:::::::::::::::: .::
NP_065 EAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG
         280       290       300       310       320       330     

             330       340       350       
pF1KB9 SSGRQVTITGSAASISLAQYLINARLSSE-KGMGCS
       :: ::.::::. :.::::::::::::.::  :::  
NP_065 SSERQITITGTPANISLAQYLINARLTSEVTGMGTL
         340       350       360       370 

>>NP_001123613 (OMIM: 608502) poly(rC)-binding protein 3  (345 aa)
 initn: 1428 init1: 891 opt: 918  Z-score: 979.5  bits: 189.7 E(85289): 8.1e-48
Smith-Waterman score: 1274; 62.0% identity (75.2% similar) in 363 aa overlap (1-354:33-343)

                                             10        20        30
pF1KB9                               MDAGVTESGLNVTLTIRLLMHGKEVGSIIG
                                     :.. :.:.::::::::::::::::::::::
NP_001 EGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIG
             10        20        30        40        50        60  

               40        50        60        70        80        90
pF1KB9 KKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNS
       ::::.::..:::::::::::::::::::.:.::::.:::::::::  :.:::: .::.::
NP_001 KKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNS
             70        80        90       100       110       120  

              100       110       120       130       140       150
pF1KB9 TAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG
        :.:.:::::::::::.:::::::::: :::::::::::::::::::::::::::.::.:
NP_001 PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG
            130       140       150       160       170       180  

              160       170       180       190       200       210
pF1KB9 VPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHA
       .:... .::::::.::::                                          
NP_001 TPDAIIQCVKQICVVMLE------------------------------------------
            190       200                                          

              220       230       240       250        260         
pF1KB9 THDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMM-HGGTGFAGID---SSSPE
                 ::.::::..:   ::.::.:.: ::. :  . . . .: :      :: :
NP_001 ----------AYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEE
                        210       220       230       240       250

           270        280       290       300       310       320  
pF1KB9 VK---GYWASLDASTQ-TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS
       ..   :  ..::::   .::::::::.::::::::::..:::::::::::::::: .:::
NP_001 AQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS
              260       270       280       290       300       310

            330       340       350       
pF1KB9 SGRQVTITGSAASISLAQYLINARLSSE-KGMGCS
       : ::.::::. :.::::::::::::.::  :::  
NP_001 SERQITITGTPANISLAQYLINARLTSEVTGMGTL
              320       330       340     




356 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:38:25 2016 done: Fri Nov  4 19:38:26 2016
 Total Scan time:  8.190 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com