hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080304/iprscan-20080304-19303898/chunk_1/iprscan-20080304-19303898.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB9835 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00001.12.fs 7 transmembrane receptor (rhodopsin family) 330.3 1e-109 1 PF00001.12.ls 7 transmembrane receptor (rhodopsin family) 332.2 8.4e-97 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00001.12.fs 1/1 56 305 .. 1 272 [] 330.3 1e-109 PF00001.12.ls 1/1 56 305 .. 1 272 [] 332.2 8.4e-97 Alignments of top-scoring domains: PF00001.12.fs: domain 1 of 1, from 56 to 305: score 330.3, E = 1e-109 *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg GN+LV+lvil+++ r++t++++lNLA+ADLLf+ltlp wa++ ++g pF1KB9835 56 GNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNG 102 gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr W fG++lCk+v+ l vn+y++illL++IS+DRYlAIvh+ r+ + pF1KB9835 103 ---WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQK 149 tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp + + k+v+l++W l++ lslP++lf++ ++++++ ++C++ pF1KB9835 150 R--HLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNS-----SPVCYEVLG 192 evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas +++ + w++++ +l +++gF++Pl+v+l+cY+++lrtl+k+ + pF1KB9835 193 NDT----AKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHM---- 234 kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel ++++a++++++vv++F+lCWlPy++vll dtl+++ i + sCe pF1KB9835 235 ----GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMrTQVI-QESCER 279 ervlptallvtlwLayvNsclNPiIY<-* ++ + +al++t+ L++++sclNPiIY pF1KB9835 280 RNNIGRALDATEILGFLHSCLNPIIY 305 PF00001.12.ls: domain 1 of 1, from 56 to 305: score 332.2, E = 8.4e-97 *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg GN+LV+lvil+++ r++t++++lNLA+ADLLf+ltlp wa++ ++g pF1KB9835 56 GNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNG 102 gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr W fG++lCk+v+ l vn+y++illL++IS+DRYlAIvh+ r+ + pF1KB9835 103 ---WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQK 149 tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp + + k+v+l++W l++ lslP++lf++ ++++++ ++C++ pF1KB9835 150 R--HLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNS-----SPVCYEVLG 192 evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas +++ + w++++ +l +++gF++Pl+v+l+cY+++lrtl+k+ + pF1KB9835 193 NDT----AKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHM---- 234 kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel ++++a++++++vv++F+lCWlPy++vll dtl+++ i + sCe pF1KB9835 235 ----GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMrTQVI-QESCER 279 ervlptallvtlwLayvNsclNPiIY<-* ++ + +al++t+ L++++sclNPiIY pF1KB9835 280 RNNIGRALDATEILGFLHSCLNPIIY 305 //