Result of FASTA (omim) for
pFN21AB9827
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9827, 325 aa
1>>>pF1KB9827 325 - 325 aa - 325 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9531+/-0.000484; mu= -5.8847+/- 0.030
mean_var=276.3910+/-55.401, 0's: 0 Z-trim(117.6): 14 B-trim: 31 in 1/56
Lambda= 0.077146
statistics sampled from 29727 (29741) to 29727 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.349), width: 16
Scan time: 7.560
The best scores are: opt bits E(85289)
XP_016866218 (OMIM: 614686) PREDICTED: protein FAM ( 325) 2142 251.7 1.5e-66
NP_036267 (OMIM: 614686) protein FAM50B [Homo sapi ( 325) 2142 251.7 1.5e-66
NP_004690 (OMIM: 300453) protein FAM50A [Homo sapi ( 339) 1158 142.2 1.5e-33
>>XP_016866218 (OMIM: 614686) PREDICTED: protein FAM50B (325 aa)
initn: 2142 init1: 2142 opt: 2142 Z-score: 1315.5 bits: 251.7 E(85289): 1.5e-66
Smith-Waterman score: 2142; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)
10 20 30 40 50 60
pF1KB9 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
250 260 270 280 290 300
310 320
pF1KB9 NKHIFPASRWEAYDPEKKWDKYTIR
:::::::::::::::::::::::::
XP_016 NKHIFPASRWEAYDPEKKWDKYTIR
310 320
>>NP_036267 (OMIM: 614686) protein FAM50B [Homo sapiens] (325 aa)
initn: 2142 init1: 2142 opt: 2142 Z-score: 1315.5 bits: 251.7 E(85289): 1.5e-66
Smith-Waterman score: 2142; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)
10 20 30 40 50 60
pF1KB9 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SFALDDLDDQADAAEARRAGNLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEK
250 260 270 280 290 300
310 320
pF1KB9 NKHIFPASRWEAYDPEKKWDKYTIR
:::::::::::::::::::::::::
NP_036 NKHIFPASRWEAYDPEKKWDKYTIR
310 320
>>NP_004690 (OMIM: 300453) protein FAM50A [Homo sapiens] (339 aa)
initn: 1726 init1: 1142 opt: 1158 Z-score: 723.4 bits: 142.2 E(85289): 1.5e-33
Smith-Waterman score: 1700; 74.3% identity (90.3% similar) in 339 aa overlap (1-325:1-339)
10 20 30 40 50 60
pF1KB9 MAQYKGTMREAGRAMHLLKKRERQREQMEVLKQRIAEETILKSQVDKRFSAHYDAVEAEL
::::::. ::::::::.::::.:::::: .:::::::.:.::..::.::::::::::::
NP_004 MAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KSSTVGLVTLNDMKARQEALVRERERQLAKRQHLEEQRLQQERQREQEQRRERKRKISCL
:::::::::::::::.:::::.:::.::::... .: ... :. ::.:...: ::::: :
NP_004 KSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQMKLEKLREKERKKEAKRKISSL
70 80 90 100 110 120
130 140 150 160
pF1KB9 SFALDDLDDQADAAE--------------ARRAGNLGKNPDVDTSFLPDRDREEEENRLR
::.:.. .. .. : . . .:::::::::::::::::::::::::
NP_004 SFTLEEEEEGGEEEEEAAMYEEEMEREEITTKKRKLGKNPDVDTSFLPDRDREEEENRLR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 EELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLE
:::::::::..::.:.::.:.::::::::::::::..:::::.::::.:::. ::::: :
NP_004 EELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMRKGNTMQQFLQKALEILRKDFSE
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 LRSAGVEQLMFIKEDLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDE
::::::::::.::::::.::.:.:::::...:::::::::.::::::::::::::.::::
NP_004 LRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDE
250 260 270 280 290 300
290 300 310 320
pF1KB9 SHAGKVVLRSWYEKNKHIFPASRWEAYDPEKKWDKYTIR
::::::::::::::::::::::::: :::::::::::::
NP_004 SHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTIR
310 320 330
325 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:31:01 2016 done: Fri Nov 4 19:31:02 2016
Total Scan time: 7.560 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]